Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq21 554 5e-153 >seq21 Length=95773 Score = 554 bits (614), Expect = 5e-153 Identities = 742/1024 (72%), Gaps = 6/1024 (1%) Strand=Plus/Plus Query 163618 TGGTTTGATGTCCTGGATGACTGGCTTAAG-CGCGATCGTTTCGTATTTATTGGTTGGTC 163676 |||||||||| | ||||||||| ||| | | || |||||||||||| | |||||||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGG-TTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 40320 Query 163677 TGGATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAAC 163736 || | || ||| |||| ||| || | ||| | || || ||| ||||||||||||| Sbjct 40321 AGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAAC 40380 Query 163737 TTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTT 163796 ||| || || || ||||| || ||||| | || ||||| || | || ||| ||| || Sbjct 40381 TTTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 40440 Query 163797 TCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTC-T 163855 | || || || || ||||| ||||| || ||||| || || || || |||| | Sbjct 40441 CTTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCA-TTATTATTCTTAT 40499 Query 163856 GGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATT 163915 ||||||| || ||||| || ||||| || ||| ||| | || || | |||| | Sbjct 40500 GGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACAT 40559 Query 163916 TTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTG 163975 |||| || | || || | |||| | | ||||| |||||| | || ||||||||| ||| Sbjct 40560 TTGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTG 40619 Query 163976 CTCGCCTGATTGGAATCA-GACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTC 164034 | || | | | | | | | || |||||||| |||||||| || | |||||||||||| Sbjct 40620 CACGT-TCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTT 40678 Query 164035 TTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCT 164094 || ||| || || | || ||||| | || |||||| |||||||||| || || | Sbjct 40679 TTTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGT 40738 Query 164095 TTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACT 164154 ||||| || || || |||||| | || | || ||| | ||||| |||||||||||||| Sbjct 40739 TTTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACA 40798 Query 164155 TTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCT 164214 || ||||| |||||||||||||| ||||||||| | |||| | || || ||| |||| Sbjct 40799 TTAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCT 40858 Query 164215 ATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTT 164274 |||||||| | || |||||||| ||||| | ||||||||| || |||||||| || Sbjct 40859 ATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACATTC 40918 Query 164275 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 164334 || ||| | | || || | ||||| ||||| |||||||| ||||| ||||| ||| Sbjct 40919 CGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTTTC 40978 Query 164335 TGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTG 164394 ||||| || || || |||||||| || || ||||| || |||||||| || || ||||| Sbjct 40979 TGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGTTA 41038 Query 164395 TTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAAT 164454 || || || || | || ||||||| || | ||||| || |||| | ||||| || Sbjct 41039 TTAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAAAC 41098 Query 164455 CTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAG 164514 | |||||||| || || ||| ||||| ||| | || || ||||| || |||||||| Sbjct 41099 TTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCGAA 41158 Query 164515 ACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTT 164574 ||||||||||| || || || ||||| || ||||| | ||||| ||| | || | Sbjct 41159 ACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTCAA 41218 Query 164575 GACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTT 164634 ||||| ||| ||||| || || ||||| ||||||||| | || | ||||| || || Sbjct 41219 GACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCTA 41278 Query 164635 TAAT 164638 |||| Sbjct 41279 TAAT 41282 Score = 426 bits (472), Expect = 2e-114 Identities = 385/484 (80%), Gaps = 0/484 (0%) Strand=Plus/Plus Query 162889 GTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGT 162948 || |||||||| || || |||||||| ||||| || ||||||||||| ||||| || ||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 162949 GTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTC 163008 || || ||||||||| | ||| ||| ||||||||||| || ||||| || || | || Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 163009 CGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 163068 ||||| || ||||||| || || ||| | || ||||| ||||||||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 163069 ACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCA 163128 || ||||||||||| || || || |||||||| |||||||| ||||||||||| || || Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 163129 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 163188 ||||||||||| ||||| || ||||||||| | ||||| ||||| ||||| || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 163189 TTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 163248 ||||| || | || | ||||| ||||| |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 163249 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCA 163308 || | ||||| || |||||||| || ||||| ||||| ||| | | |||||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 163309 GGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCA 163368 || |||||||||||||||||||| || || ||||||||||||||| | ||| | ||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAGCA 17853 Query 163369 GCTG 163372 ||| Sbjct 17854 TCTG 17857 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 162384 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162443 |||||| |||||| | |||||||| | ||||| | || |||||||||| || || | Sbjct 13082 TTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGAT 13141 Query 162444 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 162502 ||||| || || | || | || || || || |||||| |||| ||| ||||||||| Sbjct 13142 CATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCATCGCTGCTC 13200 Query 162503 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 162562 | || || || ||||| || |||||||| || || |||||||| | | || || |||| Sbjct 13201 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACA 13260 Query 162563 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCA 162611 |||||||||||||||| || ||||| |||| ||||| || ||||| || Sbjct 13261 ACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 113 bits (124), Expect = 5e-20 Identities = 108/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 162751 ATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTT 162809 |||||||| ||||| ||| ||||| ||||||||||| |||||||| || | || || || Sbjct 16127 ATGCGTCCTTGGAT-TGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATT 16185 Query 162810 CCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGG 162869 | | |||| ||| |||| ||||||||||||||||||| ||||| || ||||| || Sbjct 16186 CATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGG 16245 Query 162870 TACATTCAACTACATG 162885 || ||||||| |||| Sbjct 16246 AACTTTCAACTTCATG 16261 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 162613 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 162672 ||||| || || |||||||| || || | ||||||||| | || ||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 162673 CAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAA 162732 ||| | | || | |||||| | | || |||| |||||||| ||||| |||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 162733 CTCTCTTACCGTCTTGGTATGC 162754 | ||||||||| | ||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557574465313600