Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq21 499 3e-136 >seq21 Length=95773 Score = 499 bits (552), Expect = 3e-136 Identities = 725/1021 (71%), Gaps = 10/1021 (1%) Strand=Plus/Plus Query 168480 TGGTTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCT 168539 ||||| |||| | ||||||||| | | || |||||||| ||||| |||||||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 40321 Query 168540 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCT 168599 || |||||||||||||| ||| || |||| | || |||||| ||||||| || || Sbjct 40322 GGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAACT 40381 Query 168600 TTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTT 168659 || || || |||||||| || ||||| || | ||| || | || || ||||| Sbjct 40382 TTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 40441 Query 168660 CTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTC-TG 168718 | ||||| |||||| || || ||| | ||||| || || || | |||| || Sbjct 40442 TTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCA-TTATTATTCTTATG 40500 Query 168719 GGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTT 168778 |||||| || || ||||| ||||| | ||||||||| | || || | ||| | || Sbjct 40501 GGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACATT 40560 Query 168779 TGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGC 168838 ||| || | || || |||| | | |||| || |||||| | ||||| |||||| | || Sbjct 40561 TGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTGC 40620 Query 168839 ACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 168894 |||| || ||| | ||||| |||||||||||||| || || | |||||| |||| Sbjct 40621 ACGT----TCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTG 40676 Query 168895 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCAT 168954 |||||||| || || | || ||||| | || ||||| ||||||| || || || Sbjct 40677 TTTTTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTA 40736 Query 168955 CTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGA 169014 ||| || || | || |||||||| || || | ||| | ||||| || |||||||||| Sbjct 40737 GTTTTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGA 40796 Query 169015 CACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTG 169074 || | || ||||| |||||||||||||| || ||| |||| || | || || | | || Sbjct 40797 CATTAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 40856 Query 169075 CCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTT 169134 | ||||| |||| ||| || || || || | | | |||||||||| ||||| || | Sbjct 40857 CTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACAT 40916 Query 169135 TCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTT 169194 || |||||| || ||||| | || || || || || ||||| ||||| ||||||| Sbjct 40917 TCCGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTT 40976 Query 169195 TCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGC 169254 ||||||| || || |||||| |||| ||| || || | ||| | || ||||||||| Sbjct 40977 TCTGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGT 41036 Query 169255 TGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCA 169314 | || ||||| || | || || |||| | | || ||| || ||||| | ||||| | Sbjct 41037 TATTAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAA 41096 Query 169315 ACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTG 169374 || | |||||||||||||| || || ||||| || | || || ||||| |||||||| | Sbjct 41097 ACTTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCG 41156 Query 169375 AGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTA 169434 | || ||||| || || || || | || || |||||| ||||||| ||| | || || Sbjct 41157 AAACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTC 41216 Query 169435 TTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCC 169494 || ||||| || || || || |||||||| |||||| | || || ||||| || | Sbjct 41217 AAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTC 41276 Query 169495 T 169495 | Sbjct 41277 T 41277 Score = 282 bits (312), Expect = 5e-71 Identities = 337/467 (72%), Gaps = 0/467 (0%) Strand=Plus/Plus Query 167592 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGC 167651 || |||||||| || || ||||| || |||||||| ||||| ||| | || || ||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 167652 GTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTT 167711 ||||| || ||||| | ||| ||| ||||||||||| | ||||| || || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 167712 CGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAG 167771 |||||||| || |||| || || ||| | || ||||| |||||||| |||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 167772 ACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCC 167831 || || |||||||| || || || |||||||| ||||| | |||||||||||||| || Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 167832 TTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGG 167891 ||||||||||| || || | ||||||||||| || || ||||| ||||| ||||| ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 167892 TNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGTTTCAACTTCAACCAG 167951 | |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 167952 TCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGACGTGCTCAACCGTGCT 168011 || | ||||| ||| ||| | || ||||| ||| | ||||||||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 168012 GGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCC 168058 | |||||||||||||||||||| ||||| |||||||||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCC 17840 Score = 168 bits (186), Expect = 7e-37 Identities = 163/207 (79%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 167109 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCA 167168 ||| | |||||| | || |||||||||| || || | ||||||||||| || | | Sbjct 13104 ACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATCATGATCCCTACATTATTAACT 13163 Query 167169 GCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTAT 167227 || || || || ||||||||||| ||| ||| ||||||||| || || ||||||||||| Sbjct 13164 GCTACT-TCAGTATTCATCATCGCTTTCATCGCTGCTCCTCCAGTAGATATCGATGGTAT 13222 Query 167228 CCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 167287 ||| || |||||| |||||||| | | || || |||||||||||||||||||| || || Sbjct 13223 CCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAACATCATCTCTGGTGCTGTAGT 13282 Query 167288 TCCTTCTTCTAATGCTATTGGTCTTCA 167314 |||| |||| || ||||| ||||| || Sbjct 13283 TCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 127 bits (140), Expect = 2e-24 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 167454 ATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTC 167513 |||||||| ||||| ||| || |||||||| ||||| || || || ||||||||||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 167514 CTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGT 167573 || |||| ||| |||| ||||||||||||||||||| |||||| | ||||| || || Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 167574 ACATTCAACTACATG 167588 || ||||||| |||| Sbjct 16247 ACTTTCAACTTCATG 16261 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 167316 TTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTC 167375 ||||| || || |||||||| || | | || |||||||| ||||| |||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 167376 CAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAA 167435 ||| | | |||| |||||| | | || |||| || |||||||||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 167436 CTCTCTTACCGTCTCGGTATGC 167457 | ||||||||| | ||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560598413603200