Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq21 545 3e-150 >seq21 Length=95773 Score = 545 bits (604), Expect = 3e-150 Identities = 739/1028 (72%), Gaps = 8/1028 (1%) Strand=Plus/Plus Query 183178 TGGTTCGATGTCCTTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCT 183237 ||||| |||| | |||||||||| | | || || || || ||||| || ||||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 40321 Query 183238 GGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCT 183297 || || || ||| |||| ||| || |||| | || |||||| ||||||| ||| || Sbjct 40322 GGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAACT 40381 Query 183298 TTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTT 183357 ||||| || |||||||| ||||| | ||| |||| || | |||||| |||||| Sbjct 40382 TTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 40441 Query 183358 CTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGG 183417 | || || || || || || ||||| || ||||| || || | | || | ||| Sbjct 40442 TTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCATTATTATTCTTATGG 40501 Query 183418 GGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTT 183477 ||||| || ||||||| || ||| || ||||| ||| | || || | |||| ||| Sbjct 40502 GGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACATTT 40561 Query 183478 GTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCT 183537 || || | || ||| | |||| | | ||||| |||||| | || || |||||| |||| Sbjct 40562 GTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTGCA 40621 Query 183538 CGCTTGATTGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGT 183593 || || | ||| | |||||||||||||||||||| || || | |||||||||||| Sbjct 40622 CG-TTCA---GTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGT 40677 Query 183594 TTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAG 183653 |||||| |||||| | || || ||| | || || || ||||||||||||||||| Sbjct 40678 TTTTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAG 40737 Query 183654 TTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGAC 183713 ||| || || || || ||||| | || | |||||| | || ||||| || |||||||| Sbjct 40738 TTTTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGAC 40797 Query 183714 GTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGC 183773 |||||||| |||||||||||||| ||||||||| | |||| | || || | |||| Sbjct 40798 ATTAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 40857 Query 183774 TATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATT 183833 ||| || |||| || || || || ||||| | ||||||||| || ||||||||||| Sbjct 40858 TATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACATT 40917 Query 183834 CAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTT 183893 | |||||| | | ||||||| ||||| || || |||||||| || ||||| ||||| Sbjct 40918 CCGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTTT 40977 Query 183894 CTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTT 183953 |||||||||||| || || ||||| || || || |||||| | |||||||||||||| Sbjct 40978 CTGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGTT 41037 Query 183954 GTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAA 184013 || ||||| || | || || ||| | ||| | ||||| | |||| | ||||| || Sbjct 41038 ATTAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAAA 41097 Query 184014 TCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGA 184073 | ||||||||||| || ||| ||||| || | || || ||||| ||||| || || Sbjct 41098 CTTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCGA 41157 Query 184074 GACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTC 184133 || ||||| || || || || | | |||||||| | ||||| ||| | || || Sbjct 41158 AACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTCA 41217 Query 184134 TGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCT 184193 || |||||||| || ||| |||| || || || ||||||||| | || || ||||| Sbjct 41218 AGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCT 41277 Query 184194 TTGATGTG 184201 | || || Sbjct 41278 ATAATTTG 41285 Score = 425 bits (470), Expect = 7e-114 Identities = 378/473 (80%), Gaps = 0/473 (0%) Strand=Plus/Plus Query 182298 GTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGT 182357 |||||||||||||| || |||||||||||||| || ||||||||||| |||||||| ||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 182358 GTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTC 182417 ||||| ||||||||| | || ||| ||||||||||| || ||||| || || | || Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 182418 CGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 182477 ||||| || ||||| | || || ||| | || ||||| ||||||||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 182478 ACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCA 182537 || || |||||||| || || || || ||||| |||||||| |||||||||||||| || Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 182538 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGG 182597 ||||||||||| ||||| || ||||||||| | ||||| ||||| ||||| || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 182598 TTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 182657 ||||| || | ||| | || || ||||| |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 182658 TCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCT 182717 || | ||||| || |||||||| | ||||| ||||| || | | ||||||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 182718 GGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGA 182770 | ||||||||||||||||| || |||||||| |||||||||||| |||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGA 17846 Score = 159 bits (176), Expect = 4e-34 Identities = 179/237 (76%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 181785 TGGGAACAATTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTT 181844 |||| || ||||| |||||| | || ||||| | || ||| | || ||||||||||| Sbjct 13074 TGGGCACGTTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTT 13133 Query 181845 GGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGT 181903 |||||| | |||||||| || | || | || || || || |||||| | |||||| | Sbjct 13134 GGTGTGATCATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCAT 13192 Query 181904 AGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTA 181963 || || ||||| || |||||||| |||||||| || || || |||||||| | | || Sbjct 13193 CGCTGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATA 13252 Query 181964 TGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCA 182020 || ||||||||||||||||||||||| || || | || ||||| || ||||| || Sbjct 13253 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 182022 TTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 182081 ||||||||||| ||||||||||| || | ||||||||| | || ||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 182082 CAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCCTACATGGGACGTGAGTGGGAA 182141 ||| | | |||| |||||| | | || |||| | |||||||| |||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 182142 CTTTCTTACCGCTTAGGTATGC 182163 | |||||||| |||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 109 bits (120), Expect = 7e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 182160 ATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTC 182219 |||||||| ||||| |||||| |||||||| ||||| || || || ||||||||||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 182220 TTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGA 182279 | |||| ||| |||| |||||||| ||||| || | ||||| | || || |||||| Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 182280 ACATTCAACT 182289 || ||||||| Sbjct 16247 ACTTTCAACT 16256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611685539998400