Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq21 540 1e-148 >seq21 Length=95773 Score = 540 bits (598), Expect = 1e-148 Identities = 734/1021 (72%), Gaps = 2/1021 (0%) Strand=Plus/Plus Query 166158 TGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCT 166217 ||||| |||| | ||| |||||| | | ||| |||||||| ||||| |||||||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 40321 Query 166218 GGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACT 166277 || ||||||||| |||| ||| || |||| | || |||||| | ||||| || ||| Sbjct 40322 GGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAACT 40381 Query 166278 TTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAACTTT 166337 || || || |||||||| ||||| | || | ||| | || ||| ||||| Sbjct 40382 TTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 40441 Query 166338 CTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTC-TG 166396 | ||||| |||||||| || || ||| | ||||| || || || || |||| || Sbjct 40442 TTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCATTA-TTATTCTTATG 40500 Query 166397 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTT 166456 |||||| || |||||||| ||||| | ||||| ||| | || || | ||| | || Sbjct 40501 GGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACATT 40560 Query 166457 TGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGC 166516 ||||||| | || ||| |||||| ||||||| |||||| | || || |||||||| || Sbjct 40561 TGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTGC 40620 Query 166517 TCGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTT 166576 ||| |||| | ||||| |||||||| || |||||||| | |||||||||||| || Sbjct 40621 ACGTTCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTTTT 40680 Query 166577 CGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTT 166636 ||| || || | || ||||| | || ||||| ||||||| || || || ||| Sbjct 40681 TGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGTTT 40740 Query 166637 CGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACT 166696 || || | || |||||||| || | | ||| | ||||| || || ||||||||| | Sbjct 40741 TGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACATT 40800 Query 166697 GAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCAT 166756 |||||||| |||||||||||||| || ||| || | |||| ||| || | | ||| || Sbjct 40801 AAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTAT 40860 Query 166757 CCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAA 166816 || |||| ||| || || ||||| | | | |||||||||| ||||| || ||| Sbjct 40861 TCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACATTCCG 40920 Query 166817 GGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTG 166876 ||||| || | ||||||| |||||||| || || ||||| || || ||||| | || Sbjct 40921 TGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTTTCTG 40980 Query 166877 GTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTT 166936 ||| || || || ||| |||| || || || | ||| | || ||||||||| | || Sbjct 40981 GTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGTTATT 41040 Query 166937 TGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCT 166996 ||||| || | || || |||| | | || ||| || ||||| | ||||| ||| | Sbjct 41041 AGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAAACTT 41100 Query 166997 TCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAAC 167056 |||||||||||||| || || |||||| | | || || || || || ||||| ||||| Sbjct 41101 ACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCGAAAC 41160 Query 167057 CTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGA 167116 |||||||| || || ||| | || ||||| ||||| ||| |||||||||| || || Sbjct 41161 TTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 41220 Query 167117 TCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTA 167176 ||||| || || |||| |||||||||||||| || | ||| | ||||||||||| || Sbjct 41221 CCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCTATA 41280 Query 167177 A 167177 | Sbjct 41281 A 41281 Score = 360 bits (398), Expect = 2e-94 Identities = 365/474 (77%), Gaps = 10/474 (2%) Strand=Plus/Plus Query 165266 TCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTG 165325 |||| |||||||| |||||||||||||||||||| || ||||||||| | || || |||| Sbjct 17372 TCGTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTG 17431 Query 165326 GGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCG 165385 | ||||| ||||| || | |||||||||||||| || | |||||||| || | Sbjct 17432 GTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAA 17491 Query 165386 TCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAG 165445 |||| || |||||||||| || | ||| | || || || || || |||||||||| Sbjct 17492 TCCGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 17551 Query 165446 AGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCAT 165505 | || || |||||||| || || ||||| ||||| |||||| | || ||||||||||| | Sbjct 17552 AAACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTT 17611 Query 165506 CCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCT 165565 | |||||||| || ||||| | ||||||||| | || || ||||| || || ||||| | Sbjct 17612 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTT 17671 Query 165566 GGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACC 165625 ||||||||||| | ||| || || ||||| |||||||| ||||||||||||||||||| Sbjct 17672 GGTTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACC 17731 Query 165626 AGTCTATTGTTGATAGTCAGAACAAAATCATCCCT-----ACTTGGGCTGACGTTCTGAA 165680 | || |||||||| || |||| || | | || ||||||||| | | || Sbjct 17732 AATCAGTTGTTGAT--TC---ACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAA 17786 Query 165681 CCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCC 165734 ||||||| | ||||||||||||||||| || |||||||||||||||||||| Sbjct 17787 CCGTGCTAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCC 17840 Score = 145 bits (160), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822 ||| || |||||| | ||||| || | |||||| | || |||||||||| ||||| | Sbjct 13082 TTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGAT 13141 Query 164823 TATGATCCCCTGTTTGCTCGCCGCTACAATTTGTTTT-ATTACTGCATTCATCGCTGCTC 164881 |||||||| || | | ||||| | || || || | || ||||||||||||| Sbjct 13142 CATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCATCGCTGCTC 13200 Query 164882 CCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACA 164941 | || || || || |||||||| ||||| || || | ||||| || | ||||| |||| Sbjct 13201 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACA 13260 Query 164942 ACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCA 164990 ||||||||||||||||||| ||||| |||| ||||| ||||| || || Sbjct 13261 ACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 164992 TTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTAC 165051 ||||| || |||||||||||||| | | ||||| ||||| |||||||||||||||||| Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 165052 CAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAA 165111 || || | || | |||||| || | ||| | || ||||||||||||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 165112 CTGTCTTACCGCCTCGGTATGC 165133 | |||||||| | ||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 165130 ATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTC 165189 ||||||||||||||| ||||| || ||||| || || |||||| | || || ||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 165190 CTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGT 165249 | |||| ||| |||| ||||| ||||||||| ||||||||| | ||||| || || Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 165250 ACTTTTAACT 165259 ||||| |||| Sbjct 16247 ACTTTCAACT 16256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563651161400320