Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq21 327 1e-84 >seq21 Length=95773 Score = 327 bits (362), Expect = 1e-84 Identities = 364/486 (75%), Gaps = 0/486 (0%) Strand=Plus/Plus Query 170192 TCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTG 170251 |||| |||||||| || || ||||||||||||||||| ||||| ||| ||| || |||| Sbjct 17372 TCGTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTG 17431 Query 170252 GTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAA 170311 || | || || || || | ||||| || |||||||||||| | || || || ||| ||| Sbjct 17432 GTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAA 17491 Query 170312 TCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAG 170371 || | || ||||| || ||||| || ||| | |||||||||||||| |||||||||| Sbjct 17492 TCCGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 17551 Query 170372 AAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTA 170431 |||| |||||||| || || ||||| || ||||||||| | | ||||||||||| ||| Sbjct 17552 AAACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTT 17611 Query 170432 GCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCT 170491 || ||||| |||| | ||||||||| | ||| | | || || ||| | || | Sbjct 17612 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTT 17671 Query 170492 GGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACC 170551 |||| ||| | | ||||||| || ||||| || |||||||| || || |||||||||| Sbjct 17672 GGTTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACC 17731 Query 170552 AGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAG 170611 | ||| | || ||| | ||| || | |||||||| ||| | | ||| | | Sbjct 17732 AATCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTG 17791 Query 170612 CAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTGG 170671 | ||| ||||||||||||| ||||| || ||||| || |||||||||||| | ||||| | Sbjct 17792 CTAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAG 17851 Query 170672 CAACTG 170677 || ||| Sbjct 17852 CATCTG 17857 Score = 127 bits (140), Expect = 2e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 169732 GGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTT 169791 |||||||| ||||| | |||||||| ||||| | || | | || ||| | Sbjct 13125 GGTTGGTTTGGTGTGATCATGATCCCTACATTATTAACTGCTACTTCAGTATTCATCATC 13184 Query 169792 GCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCA 169851 ||||||||||| ||||| || || || |||||||| ||| | || || || | |||||| Sbjct 13185 GCTTTCATCGCTGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCA 13244 Query 169852 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 169911 || | || || |||||||||||||||||||| || ||||| |||||||||| |||||| Sbjct 13245 TTATTATACGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGT 13304 Query 169912 CTCCA 169916 || || Sbjct 13305 CTGCA 13309 Score = 125 bits (138), Expect = 8e-24 Identities = 115/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 169918 TTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTAT 169977 ||||| || ||||||||||| || || ||||||||||||| || |||||||||||||| Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 169978 CAATTAGTTATCTTCCACTTCCTTATCGGAATCT-CTGCCTACATGGGTAGACAGTGGGA 170036 |||||| | | | |||||| | | || |||| ||| ||||||||| | ||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTG-TTACATGGGTCGTGAGTGGGA 14792 Query 170037 ACTATCATACCGTTTAGGTATGC 170059 | |||| |||||||||||||||| Sbjct 14793 ATTATCTTACCGTTTAGGTATGC 14815 Score = 114 bits (126), Expect = 2e-20 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 170049 TTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGC 170108 ||||| |||||||||||||| |||||| || ||||| ||||| |||| || || Sbjct 16122 TTTAG--ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 16179 Query 170109 TGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTAT 170168 ||||||| | | || ||| |||| || || |||||||| ||||| |||||| ||||||| Sbjct 16180 TGTATTCATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 16239 Query 170169 CTCAGGTACATTTAACTTCATG 170190 ||||| || || ||||||||| Sbjct 16240 TTCAGGAACTTTCAACTTCATG 16261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582838033299200