Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq21 349 4e-91 >seq21 Length=95773 Score = 349 bits (386), Expect = 4e-91 Identities = 361/473 (76%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 83979 TCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGA 84038 || || |||||||| || ||||||||||||||||| ||||||||||| | ||||| Sbjct 17846 TCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATACCTAAGTTAGCACGG 17787 Query 84039 TTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTG 84098 || | | || ||||| || || | |||||| ||| ||| |||| || ||| Sbjct 17786 TTGATGATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCAACAACTGATTGGTTG 17727 Query 84099 AAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATG 84158 ||||| || || || || || || ||||| || || ||| | ||||| |||||||| Sbjct 17726 AAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATA 17667 Query 84159 CCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCA 84218 || || |||||||||||||| ||||| ||||| | |||||| |||||||| ||||| Sbjct 17666 CCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCG 17607 Query 84219 TACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCT 84278 || |||||||| | |||||| ||||| ||||| || || || || || |||||||| ||| Sbjct 17606 TATTGGAAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATGTTGTAAGTTTCTTCT 17547 Query 84279 TCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGA 84338 ||||||||||| ||||| || | ||| || | ||||| || ||||| ||||||| | Sbjct 17546 TCTTGACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTTGTTTCACGGATTAAA 17487 Query 84339 GAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCA 84398 || ||||| || | |||||| ||||| |||||||||| | ||||| ||||||||||| Sbjct 17486 GATGAAGTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCACCAAATACACCAGCT 17427 Query 84399 ACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGAC 84451 || || |||||||| || || |||||||| ||||||||||| || ||||| || Sbjct 17426 ACACCTAACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCTTGGAAAAC 17374 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 84728 ATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTA 84787 ||| ||||| ||||| || || | |||||||| |||||||| ||||||||||||||||| Sbjct 13310 ATGCAGACCGATAGCGTTTGAAGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTA 13251 Query 84788 CATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAAC 84847 | | ||||||| ||||||||||||||||| || ||||| ||||| || ||| | | Sbjct 13250 TAATAATGAACCAGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCAGCGAT 13191 Query 84848 GAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAA 84906 ||| || |||||||| || || ||| |||| | || || || ||||| | |||| Sbjct 13190 GAAAGCGATGATGAATACTGA-AGTAGCAGTTAATAATGTAGGGATCATGATCACACCAA 13132 Query 84907 ACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAA 84955 ||||||| | || | |||||| | ||| || |||| ||| |||||||| Sbjct 13131 ACCAACCGATGTATAAACGGTTTTCAGTAGAAGTGATCCACTCACAGAA 13083 Score = 136 bits (150), Expect = 5e-27 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 84455 CATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCC 84514 |||| ||||||| |||||||| ||||| | ||||| || ||||||||||||||||| || Sbjct 16261 CATGAAGTTGAAAGTTCCTGAAATACCTAAAGGCATACCGTCAGAGAAAGAACCTTGTCC 16202 Query 84515 GAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACA 84574 || ||| || | | ||||||||||| || ||||||||||| ||||||||||| ||| Sbjct 16201 GATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGC 16142 Query 84575 GATCCATGGACGCAT 84589 ||||| |||||||| Sbjct 16141 AATCCAAGGACGCAT 16127 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 84586 GCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAA--GCAAATGCACCAAT 84643 ||||||| | ||| || || | |||||| ||||||||||||||| ||| || ||| | Sbjct 14815 GCATACCTAAACGGTAAGATAATTCCCACTCACGACCCATGTAACAGCAGAT--ACCTAA 14758 Query 84644 CAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACT 84703 | ||||||| | || | | ||| ||||| ||||| || |||| ||| || || | | Sbjct 14757 GAAGAAGTGACAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGA 14698 Query 84704 TGCTGCTTCCCAAATAGGATAGAA 84727 || ||||||||||| || ||||| Sbjct 14697 AGCAGCTTCCCAAATTGGGTAGAA 14674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571263831221440