Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq21 246 9e-61 >seq21 Length=95773 Score = 246 bits (272), Expect = 9e-61 Identities = 345/484 (71%), Gaps = 0/484 (0%) Strand=Plus/Plus Query 26304 TCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTG 26363 |||| |||||||| |||||||| || || |||||||| ||||| ||| ||||| |||| Sbjct 17372 TCGTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTG 17431 Query 26364 GGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTA 26423 | || || ||||| | | ||| ||||||||||||| || |||||||| || | | Sbjct 17432 GTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAA 17491 Query 26424 TTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAG 26483 | ||||| || || | | || || | || || || || || ||||| |||| Sbjct 17492 TCCGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 17551 Query 26484 AGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGA 26543 | || || || || || || |||||||| |||||||| | ||||| || || || || Sbjct 17552 AAACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTT 17611 Query 26544 GTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATAT 26603 ||| || ||| ||||| | || ||||| | ||| ||||||| ||||| || || | Sbjct 17612 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTT 17671 Query 26604 GGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACC 26663 || | || || | ||||| | || ||||| || ||||| || ||||| ||||| |||| Sbjct 17672 GGTTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACC 17731 Query 26664 AGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAG 26723 | ||||| || ||| | || | || ||||||||||| | | ||||| | Sbjct 17732 AATCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTG 17791 Query 26724 CTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAG 26783 ||||| | || | |||||||||||||| ||||| ||||| ||||| ||| | ||||||| Sbjct 17792 CTAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAG 17851 Query 26784 CATC 26787 |||| Sbjct 17852 CATC 17855 Score = 131 bits (144), Expect = 5e-26 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||||||||| | || |||||| |||||| | || | || ||||| || ||| | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 25862 ATGATACCCTGC-TTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACC 25920 ||||| |||| | ||| | | || ||| || || || | || |||||||| || || Sbjct 13143 ATGAT-CCCTACATTATTAACTGCTACTTCAGTATTCATCATCGCTTTCATCGCTGCTCC 13201 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || |||||||| ||||| || |||||||||||||| || || ||| | ||||||||||| Sbjct 13202 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 13261 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACAT 26029 || || || || || || || || | || ||||| ||||| || ||| Sbjct 13262 CATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCAT 13310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146724016429632