Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq21 306 1e-78 >seq21 Length=95773 Score = 306 bits (338), Expect = 1e-78 Identities = 358/484 (74%), Gaps = 0/484 (0%) Strand=Plus/Minus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 ||| ||||| ||| | |||||||||||| |||||||| || |||||||||||||| |||| Sbjct 17857 CAGATGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATACCTA 17798 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087 ||| |||||||| | ||||||||||| || | || | || | |||||||| | Sbjct 17797 AGTTAGCACGGTTGATGATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCAACAA 17738 Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147 |||| || |||||||| || ||||| || || ||||||||||| || | || | ||| | Sbjct 17737 CTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAAGCAG 17678 Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTAT 36207 | | ||| || | || ||||||||||| | |||||| ||||| || || | Sbjct 17677 TGAACCAAATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 17618 Query 36208 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 36267 | || ||| || |||||||| | | |||||||| || || || || || ||||| | Sbjct 17617 TGAAAGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATGTTGT 17558 Query 36268 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 36327 | || ||||||||||| |||||||| ||||| | ||| |||||| ||||||||| Sbjct 17557 AAGTTTCTTCTTCTTGACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTTGTTT 17498 Query 36328 CACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 36387 |||| || | || |||||||| | ||||||||||||| |||||| | ||||| | Sbjct 17497 CACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCACCAA 17438 Query 36388 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAA 36447 |||| || || ||||| | ||| ||||| || |||||||| || || ||||| || || | Sbjct 17437 ATACACCAGCTACACCTAACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCTTGGA 17378 Query 36448 AGAC 36451 | || Sbjct 17377 AAAC 17374 Score = 132 bits (146), Expect = 1e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 36729 TGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAG 36788 || |||||||| ||||| || | || || | || |||||||||||||||||||| || Sbjct 13309 TGCAGACCGATAGCGTTTGAAGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAT 13250 Query 36789 AGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACA 36848 | ||||| || || || |||||||| |||||||| ||||| || ||||| ||||| | Sbjct 13249 AATAATGAACCAGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCAGCGATG 13190 Query 36849 AATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAAC 36908 || || || | ||| ||| || ||||| | || ||||||||| | || |||||| Sbjct 13189 AAAGCGATGATGAATACTGAAGTAGCAGTTAATAATGTAGGGATCATGATCACACCAAAC 13130 Query 36909 CACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 36964 || || | || | ||||| | ||| || | ||| ||||| |||| | |||| Sbjct 13129 CAACCGATGTATAAACGGTTTTCAGTAGAAGTGATCCACTCACAGAAACGTGCCCA 13074 Score = 118 bits (130), Expect = 3e-22 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 36455 CATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCC 36514 ||| || |||||||| ||||||||||| | ||||||||| ||||||||| |||||||| Sbjct 16261 CATGAAGTTGAAAGTTCCTGAAATACCTAAAGGCATACCGTCAGAGAAAGAACCTTGTCC 16202 Query 36515 AAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACA 36574 | |||||||| | |||||||||| || |||||||| || || || ||||||||| Sbjct 16201 GATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGC 16142 Query 36575 TATCCACGGCCTCAT 36589 ||||| || | ||| Sbjct 16141 AATCCAAGGACGCAT 16127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150451955868272