Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq21 300 5e-77 >seq21 Length=95773 Score = 300 bits (332), Expect = 5e-77 Identities = 358/486 (74%), Gaps = 0/486 (0%) Strand=Plus/Minus Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249 ||| ||||| || | ||||||||||||||| || ||||||||||| ||||||||||| | Sbjct 17857 CAGATGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATACCTA 17798 Query 5250 GGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGA 5309 ||| |||||||| | || || ||||| ||| | | | ||| || ||||| | Sbjct 17797 AGTTAGCACGGTTGATGATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCAACAA 17738 Query 5310 CTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 5369 |||| || |||||||| || |||||||| || ||||||||||| || || || | || | Sbjct 17737 CTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAAGCAG 17678 Query 5370 TAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGT 5429 | | ||| || | || || ||||||| ||| | |||||| ||||| ||| |||| Sbjct 17677 TGAACCAAATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 17618 Query 5430 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 5489 | || ||| || |||||||| | | |||||||| || || || || || ||||| | Sbjct 17617 TGAAAGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATGTTGT 17558 Query 5490 ACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTT 5549 | |||||||| ||||| |||||||| ||||| | ||| ||| ||||||||| Sbjct 17557 AAGTTTCTTCTTCTTGACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTTGTTT 17498 Query 5550 CACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGA 5609 |||| || | || |||||||| | || |||||||||| ||| || | ||||| | Sbjct 17497 CACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCACCAA 17438 Query 5610 ATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGA 5669 |||| ||||| ||||| | ||||||||| || |||||||| || || ||||| || |||| Sbjct 17437 ATACACCAGCTACACCTAACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCTTGGA 17378 Query 5670 ATACGA 5675 | |||| Sbjct 17377 AAACGA 17372 Score = 102 bits (112), Expect = 2e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 5957 CCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGA 6016 || || ||||| || | || || || || || || |||||||||||||| || | || Sbjct 13303 CCGATAGCGTTTGAAGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTATAATAAT 13244 Query 6017 GATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCT 6076 || || | || || ||||| || || ||||| || ||||| || ||||| | ||| || Sbjct 13243 GAACCAGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCAGCGATGAAAGCG 13184 Query 6077 AATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCC 6136 | || ||| | | ||| || ||||| | || || ||||| | ||||||||||| || Sbjct 13183 ATGATGAATACTGAAGTAGCAGTTAATAATGTAGGGATCATGATCACACCAAACCAACCG 13124 Query 6137 ACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 | || | ||||| | || ||| | ||| |||||||| Sbjct 13123 ATGTATAAACGGTTTTCAGTAGAAGTGATCCACTCACAGAA 13083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152647120207248