Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq21 315 2e-81 >seq21 Length=95773 Score = 315 bits (348), Expect = 2e-81 Identities = 360/484 (74%), Gaps = 0/484 (0%) Strand=Plus/Minus Query 25448 CAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 25507 ||||||||||||| | ||||||||||| |||||||| || |||||||||||||| |||| Sbjct 17857 CAGATGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATACCTA 17798 Query 25508 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 25567 ||| |||||||| | ||||||||||| || | || | || | |||||||| | Sbjct 17797 AGTTAGCACGGTTGATGATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCAACAA 17738 Query 25568 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 25627 |||| || |||||||| || ||||| || || ||||||||||| || | || | ||| | Sbjct 17737 CTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAAGCAG 17678 Query 25628 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTAT 25687 | | ||| || | || ||||||||||| | |||||| ||||| ||| || | Sbjct 17677 TGAACCAAATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 17618 Query 25688 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 25747 | || ||| || |||||||| | | |||||||| || || || || || ||||| | Sbjct 17617 TGAAAGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATGTTGT 17558 Query 25748 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 25807 | || ||||||||||| |||||||| ||||| | ||| |||||| ||||||||| Sbjct 17557 AAGTTTCTTCTTCTTGACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTTGTTT 17498 Query 25808 CACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 25867 |||| || | || |||||||| | ||||||||||||| |||||| | ||||| | Sbjct 17497 CACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCACCAA 17438 Query 25868 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAA 25927 |||| || || ||||| | ||| ||||| || |||||||| || || ||||| || || | Sbjct 17437 ATACACCAGCTACACCTAACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCTTGGA 17378 Query 25928 AGAC 25931 | || Sbjct 17377 AAAC 17374 Score = 129 bits (142), Expect = 2e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 26209 TGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAG 26268 || |||||||| ||||| || | || || | || || ||||||||||||||||| || Sbjct 13309 TGCAGACCGATAGCGTTTGAAGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAT 13250 Query 26269 AGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACA 26328 | ||||| || || || |||||||| |||||||| ||||| || ||||| ||||| | Sbjct 13249 AATAATGAACCAGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCAGCGATG 13190 Query 26329 AATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAAC 26388 || || || | ||| ||| || ||||| | || ||||||||| | || |||||| Sbjct 13189 AAAGCGATGATGAATACTGAAGTAGCAGTTAATAATGTAGGGATCATGATCACACCAAAC 13130 Query 26389 CACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 26444 || || | || | ||||| | ||| || | ||| ||||| |||| | |||| Sbjct 13129 CAACCGATGTATAAACGGTTTTCAGTAGAAGTGATCCACTCACAGAAACGTGCCCA 13074 Score = 118 bits (130), Expect = 3e-22 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 25935 CATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCC 25994 ||| || |||||||| ||||||||||| | ||||||||| ||||||||| |||||||| Sbjct 16261 CATGAAGTTGAAAGTTCCTGAAATACCTAAAGGCATACCGTCAGAGAAAGAACCTTGTCC 16202 Query 25995 AAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACA 26054 | |||||||| | |||||||||| || |||||||| || || || ||||||||| Sbjct 16201 GATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGC 16142 Query 26055 TATCCACGGCCTCAT 26069 ||||| || | ||| Sbjct 16141 AATCCAAGGACGCAT 16127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151991130863968