Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq177 98.7 8e-16 seq78 82.4 6e-11 >seq177 Length=181649 Score = 98.7 bits (108), Expect = 8e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183 |||||||||||| || || || |||| ||| ||| | |||| ||| |||||||| Sbjct 71349 AAGTCTGTGTCGTTGTGGTTAAATAGCAGCACCAGCACCTCCCCCCGGTAGTCCTCATCA 71408 Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243 ||||| ||||| ||||| || ||||||||||| | || || || ||||| ||||||| Sbjct 71409 ATCACGCCAGCGCCCACATCAATGAAGTGCTTTGCTGCAAGCCCGGAGCGCGGCGCGACG 71468 Query 9244 CGACCGTAG 9252 || |||||| Sbjct 71469 CGGCCGTAG 71477 >seq78 Length=354265 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 48541 CGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATA 48600 ||| ||| || |||| ||| | || ||||| ||| |||||||| |||||||||| | Sbjct 344600 CGCACCTGAGGCGCAGCACGAGGTGCAGCGTTGACTCCTTTTGAATGTTGTAATCAGCCA 344541 Query 48601 GACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAA 48660 | || | || |||| |||||| || ||||| || || ||||| || || | ||||| Sbjct 344540 AGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCTGGGGGAA 344481 Query 48661 CGCCCTCCTTGTC 48673 ||||||||||| Sbjct 344480 TACCCTCCTTGTC 344468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380931248817864