Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq21 381 6e-101 >seq21 Length=95773 Score = 381 bits (422), Expect = 6e-101 Identities = 380/489 (78%), Gaps = 3/489 (1%) Strand=Plus/Plus Query 162990 TAAC-TACATGNTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGA 163048 |||| ||| | |||| |||||||| || || ||||| || |||||||| ||||| ||| Sbjct 17360 TAACATACTGGATCGTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGT 17419 Query 163049 TTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTA 163108 | || || || |||||||| ||||||||| | || ||||||||||||||| | |||| Sbjct 17420 TAGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTA 17479 Query 163109 CTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCG 163168 |||| ||| | ||| | ||||| ||||| | || || ||| | || || || |||| Sbjct 17480 CTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCG 17539 Query 163169 GACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCT 163228 | ||||||||||| ||||||||||| || || || || || ||||||||||| || |||| Sbjct 17540 GTCAAGAAGAAGAAACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCT 17599 Query 163229 TCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTG 163288 |||| || || |||||||||||||| |||||| | ||||||||| | ||||| | || | Sbjct 17600 TCCAATACGCTTCTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAG 17659 Query 163289 TGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTT 163348 | || | || ||||||||||| | ||| | ||||||||||| |||||||||||||||| Sbjct 17660 TTGTAGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTT 17719 Query 163349 TCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATA 163408 |||||||||||||||| || ||||| || ||| || | || ||||| || | Sbjct 17720 TCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACA 17779 Query 163409 TCCTTAACAGAGCAGGACTT-GGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTC 163467 || | ||| | || |||| |||||||||||||||||||| ||||| |||||||||||| Sbjct 17780 TCATCAACCGTGC-TAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTC 17838 Query 163468 CCACTTGAC 163476 ||| | ||| Sbjct 17839 CCATTAGAC 17847 Score = 149 bits (164), Expect = 7e-31 Identities = 170/227 (75%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||| | ||| |||| || ||| || || | || |||||||||| ||||| | ||| Sbjct 13086 TGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATCATG 13145 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCT 162618 |||||| || | | | || |||| |||||||| || ||||| || || ||| Sbjct 13146 ATCCCTACATTATT---AACTGCTACTTCAGTATTCATCATCGCTTTCATCGCTGCTCCT 13202 Query 162619 CCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAAC 162678 ||||| ||||||||||||||| | || || ||| | |||||| | | || || |||||| Sbjct 13203 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAAC 13262 Query 162679 ATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCA 162725 ||||||||||||||||| ||||||| |||||| ||||| ||||| || Sbjct 13263 ATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 162865 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTC 162924 |||||||||||||| ||| || |||||||||||||| | || || ||||| ||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 162925 TTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGT 162984 | |||| ||| |||| ||||||||||||||||||| |||||| | |||||||| || Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 162985 ACTTTTAACTACATG 162999 ||||| |||| |||| Sbjct 16247 ACTTTCAACTTCATG 16261 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 162727 TTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTC 162786 ||||| || || |||||||| || || | ||||||||||| || || ||||| |||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 162787 CAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAA 162846 ||| | | || | |||||| | | || ||| ||| |||||| |||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 162847 CTTTCTTACCGCTTAGGTATGC 162868 | |||||||| |||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553075342249920