Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq21 489 2e-133 >seq21 Length=95773 Score = 489 bits (542), Expect = 2e-133 Identities = 718/1011 (71%), Gaps = 10/1011 (1%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | | ||| || || || ||||| || ||||| || | || ||| || Sbjct 40277 GATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCAGGTCTTCTTCTTTTT 40336 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||| || | || | || |||||| ||||||| ||| ||||||| || ||| Sbjct 40337 CCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAACTTTTGTAACATCATGG 40396 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798 || || ||||| | ||| |||| || | |||||| |||||| | || || || || Sbjct 40397 TATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTT 40456 Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TGGGGTCCTGAGTCTCA 164857 || || ||||| | ||||| || || || || | ||| |||||||| || |||| Sbjct 40457 TCAACACCTGCAAACAGTATGGCACACTCA-TTATTATTCTTATGGGGTCCAGAAGCTCA 40515 Query 164858 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917 || |||| || ||||| ||| | || || |||||| || || ||| | || || Sbjct 40516 AGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACATTTGTTGCTTTACATGG 40575 Query 164918 TGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTA- 164976 | | || | ||||||| |||||| | || || ||||| | |||||| ||| ||| Sbjct 40576 TTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTGCACGT-TCA---GTAA 40631 Query 164977 ---TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCT 165033 | |||||||||||||||||||| || || | |||||||||||||||||| || | Sbjct 40632 ACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTTTTTGTTTCAGTAT 40691 Query 165034 TCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAG 165093 || | || |||||| | || || || ||||||| || || || ||||| || || | Sbjct 40692 TCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGTTTTGGTGTTGCTG 40751 Query 165094 CAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCC 165153 | ||||| | || | |||||| | ||||| || || |||||||| | ||||| |||| Sbjct 40752 CTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACATTAAACCCATTCC 40811 Query 165154 ATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCA 165213 |||||||||||||||| ||| | || || | || || ||| ||||||||| || | | Sbjct 40812 ATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTA 40871 Query 165214 CAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATT 165273 | |||||||| ||||||| || ||||| || ||||| || || || ||| | Sbjct 40872 CTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACATTCCGTGCATTTAACC 40931 Query 165274 CGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 165333 | || || | ||||| ||||| |||||||| ||||| ||||| |||||||| || || | Sbjct 40932 CAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTTTCTGGTCACAAATTT 40991 Query 165334 TCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 165393 | || |||| || || ||||| || |||||||| || || ||||| || || || || | Sbjct 40992 TTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGTTATTAGTTCCGGTAA 41051 Query 165394 TGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACG 165453 || || |||| || | ||||| || ||||| | ||||| ||| | |||||||| | Sbjct 41052 CAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAAACTTACGTGCTTATG 41111 Query 165454 ATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCA 165513 | ||||| || || || | || || ||||| ||||| || || || ||||| || | Sbjct 41112 ACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCGAAACTTTCTATACTA 41171 Query 165514 AAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATG 165573 |||| || |||| |||||||| | ||||||||| |||| || || ||||| || | Sbjct 41172 AAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACG 41231 Query 165574 AAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 || || | ||||| ||||||||||| ||| | || ||||| || |||| Sbjct 41232 AACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCTATAAT 41282 Score = 325 bits (360), Expect = 4e-84 Identities = 353/468 (75%), Gaps = 0/468 (0%) Strand=Plus/Plus Query 163396 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGT 163455 || |||||||| || || ||||| || |||||||| ||||| ||||| || || |||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 163456 GTCTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTC 163515 || || ||||| ||| | ||||| || ||||| || | ||||| || || | || Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 163516 CGTGAGACGACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAG 163575 ||||| || ||||||| || || ||| | || ||||| || |||||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 163576 ACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCA 163635 || ||||||||||| || ||||| || ||||| |||||||| ||||||||||| || || Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 163636 TTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGG 163695 ||||||||| | | ||||||||| | || || ||||| || || || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 163696 TTTACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 163755 || ||||| | || | || ||||| |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 163756 TCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCT 163815 || | ||||| || |||||||| | ||||| ||||| ||| | | ||||| ||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 163816 GGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCA 163863 | ||||||||||||||||| || |||||||| |||||||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCA 17841 Score = 159 bits (176), Expect = 4e-34 Identities = 179/237 (76%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 162883 TGGGAATCTTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 162942 |||| | |||||| |||||| | |||||||| | ||||| | || |||||||||| Sbjct 13074 TGGGCACGTTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTT 13133 Query 162943 GGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGT 163001 || || | ||||| || || | || | || ||| || || |||||| |||| ||| | Sbjct 13134 GGTGTGATCATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCAT 13192 Query 163002 CGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTA 163061 ||||||||| || || || || || || ||||||||||| || |||||||| | | || Sbjct 13193 CGCTGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATA 13252 Query 163062 TGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCA 163118 || |||||||||||||||||||| || ||||| |||| ||||| || ||||| || Sbjct 13253 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 163258 ATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTC 163317 ||||| || ||||| |||||| ||||||||||| |||||||| || | || || ||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 163318 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGC 163377 | |||| ||| |||| ||||||||||||||||||| ||||| | || || || || Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 163378 ACATTCAACTACATG 163392 || ||||||| |||| Sbjct 16247 ACTTTCAACTTCATG 16261 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 163120 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 163179 ||||| || || |||||||| || || | ||||||||| | || ||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 163180 CAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAA 163239 ||| | | || | ||||||| | | || |||| || ||||| ||||| |||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 163240 CTTTCATATCGCTTAGGTATGC 163261 | || || || |||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563199969115840