Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq723 141 2e-28 seq787 122 2e-22 >seq723 Length=331235 Score = 141 bits (156), Expect = 2e-28 Identities = 148/191 (77%), Gaps = 5/191 (3%) Strand=Plus/Minus Query 213460 CCCCGTCCT---GCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCT 213516 |||| |||| ||||||| |||||| || ||| ||||||||||| || || || Sbjct 247036 CCCCCTCCTCGCGCACAAAGCGAGGCAGCGCAATGGATGCCAGGTTGCACACTGCGGTCT 246977 Query 213517 CCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCA 213576 | | || | |||||||||| |||||| ||||||||||||||||| ||||||||||| Sbjct 246976 CATCAGGCGCGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCA 246917 Query 213577 GGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCTTGTAGAGCATGTAGGGGGACCCG 213635 ||||||| ||||| ||| ||| | |||| ||||||||||||||||||||| ||| Sbjct 246916 GGTTCTGCTGGTTGCTCTT-GCGGTTGCAGCTGTCCTTGTAGAGCATGTAGGGGTTGCCG 246858 Query 213636 GTCTCTAGCTG 213646 ||||| | ||| Sbjct 246857 GTCTCGATCTG 246847 Score = 140 bits (154), Expect = 6e-28 Identities = 219/311 (70%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 213109 CCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAG 213168 |||| ||| ||||||||| ||||| |||||| ||| || ||| ||||| ||| | Sbjct 248003 CCTTGACGCCCCACATGTCCTGCTGCAGGATGCCGCGGCTGACCGGGGAGCCCTCGTACG 247944 Query 213169 AGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGA 213228 ||| | ||| | | ||||||||||| |||| | || ||| || |||||||||| Sbjct 247943 TCTCGTACGTGCCCTCCACCTTGGCCAGCCTGCAGCTGGTCTCCAGCGCTGCGTAGTAGA 247884 Query 213229 TGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGT-GAAGGGCATCATC 213287 |||| ||||| || ||| |||| |||| | || || | | || |||||||| Sbjct 247883 TGGTCTCAAAGATGTCCTTGTTCAGCTGCACTGCATC-GTCGCTGTCAAAGGGCATGCCG 247825 Query 213288 ATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGG 213347 | | |||| |||||||| ||||| || || | ||||||||| ||||| | || | Sbjct 247824 AGCAGCAGGAAGGTGTCAGCCAGGCCCTGCACGCCCAGGCCGATGGGCCTGTGGCGCATG 247765 Query 213348 TTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTG 213407 || || | | | |||| |||||| |||||| ||||||||||||||| |||||| Sbjct 247764 TTGGAGCGGCGGGCCGACTCCGTGGGGTAGAAGTTGACGTCGATGATCTTGTTCAGGTTG 247705 Query 213408 CGGGTGGCCAC 213418 |||| |||| Sbjct 247704 GCGGTGACCAC 247694 Score = 107 bits (118), Expect = 4e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 213789 AGGCTCCAGTCCCCGTCATCTCTG-ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGC 213847 ||||||||||| || |||| || | ||||||||||||||| || |||||| | Sbjct 246461 AGGCTCCAGTCGGTGTTG-CTCTCCACGCGCTGCATGAACAGGTCGTTGATCCACAGGCC 246403 Query 213848 GGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAA 213907 | ||||||||| | || | | ||| ||| || ||| ||||||| || || | Sbjct 246402 GTAGAACAGGTCGCGGGCGCGCGCCTCCTCCTTGCCGTGGTTCTTGCGCATGTCCAGCCA 246343 Query 213908 GTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCC 213967 ||||| ||||| |||||||||||||||| ||||||||| || |||||| | |||||| Sbjct 246342 CTCAAATATGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGCGCCCTTGCGCTTGCC 246283 Query 213968 GCC 213970 ||| Sbjct 246282 GCC 246280 Score = 102 bits (112), Expect = 2e-16 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 48120 CATAGAGCATGCAG-GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTG 48178 |||| |||| ||| |||||||| |||||| ||| || |||| |||||||||| |||| Sbjct 27104 CATACAGCA-GCACCGCAAAGTCAGTGTGCAGGCCCTCATCCCTGCTGATGAGCTCGTTA 27162 Query 48179 GAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAG 48238 |||||| ||| || ||||| | |||| || ||||||||||| || || ||| | Sbjct 27163 GAGAAGGTGAGGCCCGGCATAAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTG 27222 Query 48239 CCAGAGAAGAAGATGCCCTCCAC 48261 || |||||| |||||||||||| Sbjct 27223 CCGGAGAAGTGGATGCCCTCCAC 27245 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||||||||||| || ||||||||| ||||| ||||| ||||| || ||||||||| Sbjct 248243 GTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTTGCGGTGGGCATG 248184 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCC 213080 || |||||||| || ||||| | ||| |||| | ||||| || || ||| | || Sbjct 248183 GGCGCCACCAGCAGGCTGTTGCGCACGCCGTTGGCAGCGATGTCGCCGCGCAGCGCGTCC 248124 Query 213081 CAGTCCCATCTGCC 213094 |||||||| | ||| Sbjct 248123 CAGTCCCAGCGGCC 248110 >seq787 Length=122967 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| |||| | ||||| |||||| ||| || || |||||||||||| |||||||| Sbjct 88041 TACAGCAGGCAGCCGAAGTCTGTGTGCAGGCCCTCATCGCGGCTGATGAGCTCGTTGGAG 88100 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || ||||||| || | || ||||||||||| || || ||| ||| Sbjct 88101 AAGGTGAGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCT 88160 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCG 48268 |||||||||||||||||||| || ||| Sbjct 88161 GAGAAGAAGATGCCCTCCACGGCGGCG 88187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931516870789120