Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq787 129 1e-24 seq723 104 4e-17 >seq787 Length=122967 Score = 129 bits (142), Expect = 1e-24 Identities = 134/173 (77%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT- 25928 |||| ||||| ||||| |||| || || |||||||||||||| ||| || || Sbjct 88210 TTTGCGGAGCGCCTGGTGGCCTACGCCGCCGTGGAGGGCATCTTCTTCTCAGGCAGCTTC 88151 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 |||| ||||||||||||||||| || || |||||||||||| ||| |||||||| Sbjct 88150 TGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTCACCTTCTCCAACGA 88092 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||||||||| | || ||||| || |||| ||| || | ||||||||| |||| Sbjct 88091 GCTCATCAGCCGCGATGAGGGCCTGCACACAGACTTCGGCTGCCTGCTGTACA 88039 >seq723 Length=331235 Score = 104 bits (114), Expect = 4e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 || || | ||| ||||||| ||||| | || | ||||||||| ||||| |||| Sbjct 246470 GGGCAGAACAGGCTCCAGTCGGTGTTGCTCTCCACGCGCTGCATGAACAGGTCGTTGATC 246411 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 ||||| | | || || || | || ||| ||||||| ||||| ||| || | || Sbjct 246410 CACAGGCCGTAGAACAGGTCGCGGGCGCGCGCCTCCTCCTTGCCGTGGTTCTTGCGCATG 246351 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 |||| ||||||| ||||| ||||||||||||||||| |||| ||| | ||||| Sbjct 246350 TCCAGCCACTCAAATATGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGCGCCCTTG 246291 Query 222179 CGCTTGTTGCCACCCTG 222195 |||||| ||| ||||| Sbjct 246290 CGCTTGCCGCCGCCCTG 246274 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 221107 CATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGA 221166 || ||||| ||| ||||| ||| || || ||||| | | | ||| | ||| Sbjct 248304 CAGGTGCTGGTTGACCACGGTGAACTCGCCGCTCAGCACGCGGCGCACGTAGATGTTGCT 248245 Query 221167 AGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCAT 221226 ||| | || |||| || ||||||||||||||||||||| ||||| ||||||||||| Sbjct 248244 GGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTTGCGGTGGGCAT 248185 Query 221227 GGGTGCCACCAGCAGACTGTTGCGCA 221252 ||| ||||||||||| |||||||||| Sbjct 248184 GGGCGCCACCAGCAGGCTGTTGCGCA 248159 Score = 100 bits (110), Expect = 5e-16 Identities = 117/153 (76%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGC 25934 |||| ||| | |||||||| ||| |||||||||||| ||| ||| || |||| | Sbjct 27268 AGCGCCTGCTGGCCTTTGCCTGC-GTGGAGGGCATCCACTTCTCCGGCAGCTTCTGCG-C 27211 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 |||||||||||||||| || ||| ||||| || || ||| || ||||||||||| Sbjct 27210 CATCTTCTGGCTCAAGAAGCGGGGCCTTATGCCGGGCCTCACCTTCTCTAACGAGCTCAT 27151 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGC 26027 ||||||||| ||||| || |||| || ||||| Sbjct 27150 CAGCAGGGATGAGGGCCTGCACACTGACTTTGC 27118 Score = 96.9 bits (106), Expect = 6e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||||||| ||||| || ||| || ||| |||| | |||||| || || ||| Sbjct 246998 GCCAGGTTGCACACTGCGGTCTCATCAGGCGCGGTGTACTCCACGATCTCCGTGCACAGG 246939 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGC-GTCCTT 221832 ||||||||||||||||| ||||||| | || || |||||| ||| |||| |||||| Sbjct 246938 TTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTG-CAGCTGTCCTT 246880 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCC 221869 ||||||||| |||| ||| ||||| | ||| ||| Sbjct 246879 GTAGAGCATGTAGGGGTTGCCGGTCTCGATCTGCGCC 246843 Score = 93.3 bits (102), Expect = 8e-14 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 ||| || |||| |||||||||||||||||| |||||| || | || ||| | Sbjct 247900 CAGCGCTGCGTAGTAGATGGTCTCAAAGATGTCCTTGTTCAGCTGCACTGCATCGTC-GC 247842 Query 221479 AGTGAA-GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 || || |||||| | |||| | | ||| ||| ||||| ||||| || || | |||| Sbjct 247841 TGTCAAAGGGCATGCCGAGCAGCAGGAAGGTGTCAGCCAGGCCCTGCACGCCCAGGCCGA 247782 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCG--CTTCTGGCACGGGATAAAAGTTGACGTC 221595 |||||||||| | | |||||| |||||| | | || | ||| || ||||||||||| Sbjct 247781 TGGGCCTGTGGCGCATGTTGG-AGCGGCGGGCCGACT-CCGTGGGGTAGAAGTTGACGTC 247724 Query 221596 GATCAGATTGTTGAGGTT 221613 ||| | ||||| ||||| Sbjct 247723 GATGATCTTGTTCAGGTT 247706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928828916753920