Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq21 495 4e-135 >seq21 Length=95773 Score = 495 bits (548), Expect = 4e-135 Identities = 722/1018 (71%), Gaps = 2/1018 (0%) Strand=Plus/Plus Query 9811 ATGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTC 9870 ||||||||| | |||||||||| | | ||| || || || ||||| |||||||| Sbjct 40261 ATGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 40320 Query 9871 TGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTAC 9930 || || ||||||||||| ||| || ||||| | || || ||| ||||||| || || Sbjct 40321 AGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAAC 40380 Query 9931 GTTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTT 9990 ||||| || ||||| || || || | || | | |||| | || ||| ||| || Sbjct 40381 TTTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 40440 Query 9991 CCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-T 10049 | | || || || || ||||| ||||| | ||||| || || || || | ||| | Sbjct 40441 CTTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCA-TTATTATTCTTAT 40499 Query 10050 GGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTT 10109 ||||||| || |||| || ||||| || ||| || | || || | ||| | | Sbjct 40500 GGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACAT 40559 Query 10110 TTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGG 10169 |||| || | || || | || | |||||| || || |||||||| || ||||| | | Sbjct 40560 TTGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTG 40619 Query 10170 CGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTT 10229 | | | | | | || |||||||||||||| || ||||| | ||||||||||||| Sbjct 40620 CACGTTCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTTT 40679 Query 10230 TTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTT 10289 |||| || ||| | || || ||| | ||||| || ||||||||||||| || |||| Sbjct 40680 TTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGTT 40739 Query 10290 TCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGC 10349 | || || || || || ||||| || || | ||| |||| || |||||||| ||||| Sbjct 40740 TTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACAT 40799 Query 10350 TCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAA 10409 | || || |||||||||||||| ||||||||| | | || | || | ||| || | Sbjct 40800 TAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTA 40859 Query 10410 TCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCA 10469 | ||||| | ||||| ||||||||| | | | ||||||| || |||||||| ||| Sbjct 40860 TTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACATTCC 40919 Query 10470 AAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCT 10529 || ||| | ||||||| ||||| || || || ||||| ||||| |||||||||| Sbjct 40920 GTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTTTCT 40979 Query 10530 GGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGT 10589 |||| || || ||||| ||||||| || ||||| |||||||| ||||||||| | | Sbjct 40980 GGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGTTAT 41039 Query 10590 TTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATC 10649 | || || || | || || |||| ||| | ||||| | ||||| | ||||| || Sbjct 41040 TAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAAACT 41099 Query 10650 TTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGA 10709 | |||||||| || || ||||| ||||| || | || | ||||| || || || || | Sbjct 41100 TACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCGAAA 41159 Query 10710 CGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTG 10769 | |||||||| || ||||| | | || |||||| ||||||| |||||||| | | Sbjct 41160 CTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 41219 Query 10770 ACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACT 10827 |||||||||||||| | || || ||||| |||||||| | ||| | ||||| || || Sbjct 41220 ACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCT 41277 Score = 342 bits (378), Expect = 5e-89 Identities = 356/467 (76%), Gaps = 0/467 (0%) Strand=Plus/Plus Query 8752 GTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGT 8811 || ||||| ||||| || ||||| || |||||||| ||||||||| | ||||| |||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 8812 GTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTT 8871 || || || || || | || || || ||||| |||||| | |||||||| || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 8872 CGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAA 8931 ||||| || || |||| ||| ||| ||| | || ||||| |||||||||||||| ||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 8932 ACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCT 8991 ||||||||||| || ||||| || || ||||||||||| || ||||||||||| || ||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 8992 TTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGG 9051 || ||||| ||| | || || |||||| | ||||| ||||| || || || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 9052 TTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAG 9111 || || || | || | || || |||||||||||||| || || |||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 9112 TCCATTATCGACGGACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCA 9171 || || | || |||||| || || | ||||| ||||| ||| | | ||||| || Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 9172 GGACTCGGTATGGAAGTCATGCACGAAAGAAACGCACACAACTTCCC 9218 | ||||||||||| ||||||||| | ||||| ||||||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCC 17840 Score = 134 bits (148), Expect = 1e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8238 TTGGGAAAATTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTT 8297 ||||| | ||| || || ||| ||||||| || | || || || || |||| ||||| Sbjct 13073 TTGGGCACGTTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTT 13132 Query 8298 TGGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGT 8357 ||| || |||||||||| || | | | ||||| ||||| | ||| ||| | Sbjct 13133 TGGTGTGATCATGATCCCTACATTATTAACTGCTACTTCAGTATTCATCATCGCTTTCAT 13192 Query 8358 TGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTA 8417 ||||||||||| || || ||||| || ||||| || |||||| |||| || | | || Sbjct 13193 CGCTGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATA 13252 Query 8418 CGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCA 8474 ||| |||||||||||||||||||| || ||||| | || ||||| || || || || Sbjct 13253 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 127 bits (140), Expect = 2e-24 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 8614 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTC 8673 |||||||||||||| ||| || |||||||| || ||||| |||||| ||||||||||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 8674 CTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGT 8733 | |||| ||| | || |||||||| |||||||| ||||||||| | ||||| || || Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 8734 ACGTTCAACT 8743 || ||||||| Sbjct 16247 ACTTTCAACT 16256 Score = 116 bits (128), Expect = 4e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 8476 TTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTAC 8535 |||||||| || |||||||| |||||| | ||||||||| | |||||||||||||||||| Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 8536 CAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAA 8595 || | | |||| |||||| || | || ||| ||| ||||||||||| |||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 8596 CTTTCTTACCGCCTTGGCATGC 8617 | |||||||| | || |||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516471168192000