Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1022 86.0 4e-11 seq21 86.0 4e-11 >seq1022 Length=134933 Score = 86.0 bits (94), Expect = 4e-11 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 96878 GGACCATTAGCTCAATTGGT-AGAGCAATCGCCTGCAGAGCGAGAGGTT-ACTGGTTCAA 96935 |||||||||||||| ||||| ||||| |||| || ||||||||||| |||||||||| Sbjct 132393 GGACCATTAGCTCAGTTGGTTAGAGCGCTCGCTTGATAAGCGAGAGGTTCACTGGTTCAA 132452 Query 96936 GTCCAGTATGGTCC 96949 |||||||||||||| Sbjct 132453 GTCCAGTATGGTCC 132466 >seq21 Length=95773 Score = 86.0 bits (94), Expect = 4e-11 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 96878 GGACCATTAGCTCAATTGGT-AGAGCAATCGCCTGCAGAGCGAGAGGTT-ACTGGTTCAA 96935 |||||||||||||| ||||| ||||| |||| || ||||||||||| |||||||||| Sbjct 6584 GGACCATTAGCTCAGTTGGTTAGAGCGCTCGCTTGATAAGCGAGAGGTTCACTGGTTCAA 6525 Query 96936 GTCCAGTATGGTCC 96949 |||||||||||||| Sbjct 6524 GTCCAGTATGGTCC 6511 Score = 86.0 bits (94), Expect = 4e-11 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 96878 GGACCATTAGCTCAATTGGT-AGAGCAATCGCCTGCAGAGCGAGAGGTT-ACTGGTTCAA 96935 |||||||||||||| ||||| ||||| |||| || ||||||||||| |||||||||| Sbjct 89269 GGACCATTAGCTCAGTTGGTTAGAGCGCTCGCTTGATAAGCGAGAGGTTCACTGGTTCAA 89328 Query 96936 GTCCAGTATGGTCC 96949 |||||||||||||| Sbjct 89329 GTCCAGTATGGTCC 89342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268120519842464