Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq21 269 8e-68 >seq21 Length=95773 Score = 269 bits (298), Expect = 8e-68 Identities = 350/484 (72%), Gaps = 0/484 (0%) Strand=Plus/Minus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 || ||||| |||| |||||||| ||||| ||||| |||||||||||||| | || | | Sbjct 17855 GATGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATACCTAAG 17796 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATG 17951 ||||| | ||||| | |||||||||||| || || | ||| | | |||| Sbjct 17795 TTAGCACGGTTGATGATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCAACAACT 17736 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||||||||||||||| || || || || ||||||||||| || || || | || || Sbjct 17735 GATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTG 17676 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTA 18071 | ||| || | || ||||||||||| |||||||| |||| | ||||| Sbjct 17675 AACCAAATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 17616 Query 18072 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATAC 18131 || ||| || |||||||| | | |||||||| || || || || || || || || Sbjct 17615 AAAGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATGTTGTAA 17556 Query 18132 GTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCT 18191 || ||||||||||| || ||||| ||||| | ||| ||| || ||||| ||||| Sbjct 17555 GTTTCTTCTTCTTGACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTTGTTTCA 17496 Query 18192 CTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 18251 | || | || |||||||| | ||||||||||||| |||||| | ||||| ||| Sbjct 17495 CGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCACCAAAT 17436 Query 18252 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAAT 18311 || || || ||||| | ||| ||||| || |||||||| || || ||||| |||||||| Sbjct 17435 ACACCAGCTACACCTAACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCTTGGAAA 17376 Query 18312 ACGA 18315 |||| Sbjct 17375 ACGA 17372 Score = 132 bits (146), Expect = 1e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 18591 TGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAG 18650 || |||||||| ||||| || | || || | || || || |||||||||||||| || Sbjct 13309 TGCAGACCGATAGCGTTTGAAGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAT 13250 Query 18651 AGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACA 18710 | ||| | || || || |||||||| |||||||| || || || ||||||||||| | Sbjct 13249 AATAATGAACCAGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCAGCGATG 13190 Query 18711 AATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAAC 18770 || || || | ||| ||| || || ||||| | || ||||||||| | || |||||| Sbjct 13189 AAAGCGATGATGAATACTGAAGTAGCAGTTAATAATGTAGGGATCATGATCACACCAAAC 13130 Query 18771 CACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAAACTTTCCCA 18826 || || | ||| | ||||| | ||| || | ||| ||||| |||| | |||| Sbjct 13129 CAACCGATGTATAAACGGTTTTCAGTAGAAGTGATCCACTCACAGAAACGTGCCCA 13074 Score = 80.6 bits (88), Expect = 8e-11 Identities = 105/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 18448 GCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGC-GATGCCGATG 18506 ||||||||| | ||| | |||||| | || ||||||||| | || ||| || | | Sbjct 14815 GCATACCTAAACGGTAAGATAATTCCCACTCACGACCCATGTAA-CAGCAGATACCTAAG 14757 Query 18507 AGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTT 18566 | ||||| | || || | ||| || || || ||||| ||||||||||| || | | Sbjct 14756 AAGAAGTGACAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGAA 14697 Query 18567 GCAGCTTCCCAGATTGGGTAGAA 18589 ||||||||||| ||||||||||| Sbjct 14696 GCAGCTTCCCAAATTGGGTAGAA 14674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151315941832592