Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq21 524 1e-143 >seq21 Length=95773 Score = 524 bits (580), Expect = 1e-143 Identities = 721/1003 (72%), Gaps = 4/1003 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || ||||| |||||||| ||||| || ||| || ||||| || Sbjct 41277 AGAGCGTTACCACGAGGTAATACTTCTTCAGGGAATACTAAACGTTCGTGTGGTTGGTCT 41218 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | ||||||||| |||| || || || || ||||| || Sbjct 41217 TGAGCAGCCATCCAAGCACGAATACCTTCATTTAATAAAATATTTTTAGTATAGAAAGTT 41158 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 ||||||||||| ||||| || || | || ||||| ||||| |||||||||||||| | | Sbjct 41157 TCGAACTCTGGGTCTTCAGCAGCACGAATTTCTTGTGATACGAAGTCATAAGCACGTAAG 41098 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || ||||| | ||||| || ||| || | | |||| || || | || ||||| || Sbjct 41097 TTTAGAGCTAAACCAACAACACCAATCGCAGACATCCATAGTCCTGTTACCGGAACTAAT 41038 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | ||||||||| || | ||| | || || || |||| |||||| ||||| |||||| Sbjct 41037 AACATAAAGAAGTGAAGCCAACGTTTGTTTGAGAAAGCAACACCAAAAATTTGTGACCAG 40978 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 |||||||| || || ||||| || ||||| ||||| |||| || | | ||||| | Sbjct 40977 AAACGGTTCGCAGTTACCATAGAGTAAGTTTCTTCAGCTTGAGTTGGGTTAAATGCACGG 40918 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || |||||||| ||||||||||||| | | ||||| || ||||| ||||||| || Sbjct 40917 AATGTGTTTGCACCATCACCATCTTCAAATAATGTGTTTTCAACAGTAGCACCGTGAATA 40858 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | | | || | || | | ||| |||||||||||||||||||||||||| | Sbjct 40857 GCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCATATGGAATGGGTTTAAT 40798 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||||||||| || || || | ||| | | || | || || || ||||||||||| Sbjct 40797 GTCCAGTTATGAAAACCTTGGAAGAACAAAATAAAACGGAAGATAGCAGCAACACCAAAA 40738 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 || ||||||||||||| || ||||| | || || || | || || |||||| Sbjct 40737 CTAGGTGCAAAGAACCAACCTGATTGTCCTAATGGGTAAATTAAGAATACTGAAACAAAA 40678 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACG-AATTCCAATTAACCTAGC 102368 ||||| ||||| | || || |||||||||||||| ||||| || | | | ||| | || Sbjct 40677 ACAGCAATAGGAGCTGAAAAAGCAATAGCATTGTAAGGACGTAAGTTTACTGAACGT-GC 40619 Query 102369 CAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAA 102428 | || |||||||| | |||||| ||||| | |||| | ||| || | ||| ||||| Sbjct 40618 AATTTCAAATTGACGTAACATGAATCCAATTAAACCAAAAGAACCATGTAAAGCAACAAA 40559 Query 102429 AGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCA 102488 | ||| | || || | ||| ||| | ||||| ||||||||||| |||||||| Sbjct 40558 TGTCCATAAACCACCTAATTGACACCAACGAGTAAAATCACCTTGAGCTTCTGGACCCCA 40499 Query 102489 -AAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGA 102547 ||| | || || || || ||||| || ||||| ||||| || ||||| || | || Sbjct 40498 TAAGAATAATAA-TGAGTGTGCCATACTGTTTGCAGGTGTTGAAACTGCAGCAGTTAAGA 40440 Query 102548 AATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACG 102607 | ||| |||||| | |||| || || | ||| || |||||||| || || |||| | Sbjct 40439 AGTTACAACCTTCTAAGTAAGAAGTAGCTAACCCATGTGTATACCATGATGTTACAAAAG 40380 Query 102608 TCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAG 102667 | || ||||||| ||| || || | ||| | || ||| ||||||||||| || || | Sbjct 40379 TTGTACCAGTAAACCAACCTCCTAGTGCAAAGTATGCACAAGGAAAAAGAAGAAGACCTG 40320 Query 102668 ACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATC 102710 ||||||| ||||| || || || ||| | | ||||||||| Sbjct 40319 ACCAACCTACAAATACGAAACGGTCTTGACGTAACCAGTCATC 40277 Score = 352 bits (390), Expect = 4e-92 Identities = 365/488 (75%), Gaps = 0/488 (0%) Strand=Plus/Minus Query 103166 TCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATA 103225 ||| ||| || | ||| | |||||||||||||||||||| |||||||| ||||||||| Sbjct 17861 TCTACAGATGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATA 17802 Query 103226 CCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCA 103285 || | ||| ||||||| | ||| ||||| ||||| || |||||||| || |||| Sbjct 17801 CCTAAGTTAGCACGGTTGATGATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCA 17742 Query 103286 AGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGT 103345 | | || |||||||||||||| ||||| |||||||| ||||| || || ||| | Sbjct 17741 ACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAA 17682 Query 103346 GCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAG 103405 || |||||||| ||||| || ||||| | ||| Sbjct 17681 GCAGTGAACCAAATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 17622 Query 103406 TTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATG 103465 |||||||| || |||||||||||||| |||||||| |||||||| || |||||||||||| Sbjct 17621 TTGTTGAAAGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATG 17562 Query 103466 TTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTC 103525 ||||| || ||||| ||||| ||||| ||||| || | ||| |||||| ||||||| Sbjct 17561 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTT 17502 Query 103526 GTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCA 103585 || ||||| | | || || ||||| | ||||||||||||||| ||| | ||||||| Sbjct 17501 GTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCA 17442 Query 103586 CCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCT 103645 || || || ||||| || || | ||||||||| |||||||| |||||||||||||| ||| Sbjct 17441 CCAAATACACCAGCTACACCTAACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCT 17382 Query 103646 TGGAAGAC 103653 ||||| || Sbjct 17381 TGGAAAAC 17374 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 103931 TGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTAC 103990 || ||||| || ||||| || | ||||| || |||||||||||||||||||| ||||| Sbjct 13309 TGCAGACCGATAGCGTTTGAAGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAT 13250 Query 103991 ATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACG 104050 | | |||||||| || || ||||| || || |||||||| || ||||| || || | | Sbjct 13249 AATAATGAACCAGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCAGCGATG 13190 Query 104051 AAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAA 104109 ||||| | |||||| | || || || | || | || |||||||| | |||||| || Sbjct 13189 AAAGCGATGATGAATACTGA-AGTAGCAGTTAATAATGTAGGGATCATGATCACACCAAA 13131 Query 104110 CCAACCAACATAGAGACGGTTGTTTGTCGATGTAACCCACTCGCAGAA 104157 |||||| | || | |||||| | || || || | |||||| ||||| Sbjct 13130 CCAACCGATGTATAAACGGTTTTCAGTAGAAGTGATCCACTCACAGAA 13083 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 103788 GCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGA 103847 |||| || | |||||| || |||||||||||||| ||||| || |||| || | || Sbjct 14815 GCATACCTAAACGGTAAGATAATTCCCACTCACGACCCATGTAACAGCAGATACCTAAGA 14756 Query 103848 GGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATG 103907 |||||| | || | | |||| ||||||||||||| || | ||||||||| | ||| | Sbjct 14755 AGAAGTGACAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGAAG 14696 Query 103908 CTGCTTCCCAAATGGGATAGAA 103929 | ||||||||||| || ||||| Sbjct 14695 CAGCTTCCCAAATTGGGTAGAA 14674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633502766917440