Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq21 304 4e-78 >seq21 Length=95773 Score = 304 bits (336), Expect = 4e-78 Identities = 360/488 (74%), Gaps = 0/488 (0%) Strand=Plus/Minus Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521 || || ||||| | ||| | ||||||||||| ||||| || || ||||| || || | Sbjct 17861 TCTACAGATGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATA 17802 Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 || | ||| |||||||| | ||||||||||| ||||| | || | || | | | | Sbjct 17801 CCTAAGTTAGCACGGTTGATGATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCA 17742 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | |||||||| ||||||||||| || | |||||||||||| || || | || | Sbjct 17741 ACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAA 17682 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| ||||||||||||||||| ||||| ||||| | ||||| || | ||| || Sbjct 17681 GCAGTGAACCAAATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 17622 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || ||| ||||||||||| | |||||||| || ||||| || || || || Sbjct 17621 TTGTTGAAAGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATG 17562 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821 |||||||| ||||| |||||||| || ||||| || | ||| || | | |||||| Sbjct 17561 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTT 17502 Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881 || ||||| || | || || || || | |||||||||||||||||| || ||| Sbjct 17501 GTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCA 17442 Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941 |||||||| || || ||||| | |||||| ||||| ||||||||||| || || ||||| Sbjct 17441 CCAAATACACCAGCTACACCTAACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCT 17382 Query 21942 TGGAACAC 21949 ||||| || Sbjct 17381 TGGAAAAC 17374 Score = 96.9 bits (106), Expect = 1e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 22085 CATCCCTAGTCGATA-GCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGA 22143 ||| |||| || || | ||| ||||||||| || ||||||||| ||| || | || Sbjct 14814 CATACCTAAACGGTAAGATAA-TTCCCACTCACGACCCATGTAACAGCAGATACCTAAGA 14756 Query 22144 GGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAG 22203 |||||| | ||| | | |||| | ||||| |||||||| | ||| ||||| | | || Sbjct 14755 AGAAGTGACAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGAAG 14696 Query 22204 CAGCTTCCCAAATTGGGTAGAA 22225 |||||||||||||||||||||| Sbjct 14695 CAGCTTCCCAAATTGGGTAGAA 14674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146205624851040