Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq21 448 6e-121 >seq21 Length=95773 Score = 448 bits (496), Expect = 6e-121 Identities = 725/1043 (70%), Gaps = 25/1043 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 ||| || |||||||| | ||||| |||||||| |||||||| ||| || || ||||| Sbjct 41281 TTATAGAGCGTTACCACGAGGTAATACTTCTTCAGGGAATACTAAACGTTCGTGTGGTTG 41222 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 ||| || | |||||| || | || |||||||| | | ||| || || |||||||| Sbjct 41221 GTCTTGAGCAGCCATCCAAGCACGAATACCTTCATTTAATAAAATATTTTTAGTATAGAA 41162 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 ||| ||||||||||||||||| || || | || ||||| ||||| ||||| || || | Sbjct 41161 AGTTTCGAACTCTGGGTCTTCAGCAGCACGAATTTCTTGTGATACGAAGTCATAAGCACG 41102 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 | ||| || |||| ||| || | ||| || | || |||| | || | || ||||| Sbjct 41101 TAAGTTTAGAGCTAAACCAACAACACCAATCGCAGACATCCATAGTCCTGTTACCGGAAC 41042 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| |||||| | | | |||||| || || || | |||||| || ||||| Sbjct 41041 TAATAACATAAAGAAGTGAAGCCAACGTTTGTTTGAGAAAGCAACACCAAAAATTTGTGA 40982 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 |||||| | |||||| || | |||| ||||||||||| | || || || | ||||| Sbjct 40981 CCAGAAACGGTTCGCAGTTACCATAGAGTAAGTTTCTTCAGCTTGAGTTGGGTTAAATGC 40922 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || | ||| | || ||| || ||||| | ||||| Sbjct 40921 ACGGAATGT----GTTTGCA-----CCATCACCAT------------CTTCAAATAATGT 40883 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||| | || || ||||| ||||| ||||||| ||| || |||||| | || ||||| Sbjct 40882 GTTTTCAACAGTAGCACCGTGAATAGCACATAATAAAGCAGCACCTAAAACACCAGCAAC 40823 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 ||||||||| || ||||| || ||||| ||| || |||||||| | ||| || ||| | Sbjct 40822 ACCCATCATATGGAATGGGTTTAATGTCCAGTTATGAAAACCTTGGAAGAACAAAATAAA 40763 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||| ||||| || || ||||| || ||||| |||||||||| || |||| ||| Sbjct 40762 ACGGAAGATAGCAGCAACACCAAAACTAGGTGCAAAGAACCAACCTGATTGTCCTAATGG 40703 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 || || | || | | || || || ||| ||| || || || | || ||||| Sbjct 40702 GTAAATTAAGAATACTGAAACAAAAACAGCAATAGGAGCTGAAAAAGCAATAGCATTGTA 40643 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||| | | | ||| | ||| || |||||||| | | |||||| || || | || Sbjct 40642 AGGACGTAAGTTTACTGAACGTGCAATTTCAAATTGACGTAACATGAATCCAATTAAACC 40583 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 ||| |||||||| || ||||| |||||| ||| || | ||| |||||||| || Sbjct 40582 AAAAGAACCATGTAAAGCAACAAATGTCCATAAACCACCTAATTGACACCAACGAGTAAA 40523 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGA--GACTATGACCCATTGCGTCACCA 123703 ||||| ||||| || ||||| | ||| | | || | || |||| || || Sbjct 40522 ATCACCTTGAGCTTCTGGACCCCATAAGAATAATAATGAGTGTG--CCATACTGTTTGCA 40465 Query 123704 GGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCA 123763 ||||| || ||||| || ||||||||||| || || | || |||| || | ||| Sbjct 40464 GGTGTTGAAACTGCAGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAACCCA 40405 Query 123764 TGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATAC 123823 ||||||||||||||||| || || || || || |||||||| || | || | || Sbjct 40404 TGTGTATACCATGATGTTACAAAAGTTGTACCAGTAAACCAACCTCCTAGTGCAAAGTAT 40345 Query 123824 GCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAAC 123883 |||||||| | ||| | |||||| ||||| |||| ||||| ||||| ||| |||| Sbjct 40344 GCACAAGGAAAAAGAAGAAGACCTGACCAACCTACAAATACGAAACGGTCTTGACGTAAC 40285 Query 123884 CAGTCGTCAAGAACATCAAACCA 123906 ||||| ||| |||||||||| Sbjct 40284 CAGTCATCAGCGTCATCAAACCA 40262 Score = 372 bits (412), Expect = 4e-98 Identities = 374/486 (77%), Gaps = 0/486 (0%) Strand=Plus/Minus Query 124044 CAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCA 124103 ||||||||| ||||| |||||||||||| || || | ||| ||||||||||||||||| | Sbjct 17857 CAGATGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATACCTA 17798 Query 124104 AGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAA 124163 |||| || | ||| | | ||| ||||||| | | || | | |||||||| Sbjct 17797 AGTTAGCACGGTTGATGATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCAACAA 17738 Query 124164 CTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGG 124223 |||||||||| ||||||||||| || | |||||| ||||| || | ||||| | || | Sbjct 17737 CTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAAGCAG 17678 Query 124224 TTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGT 124283 | ||||| | || |||||| || || | |||| ||||||||| | | ||||||| Sbjct 17677 TGAACCAAATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 17618 Query 124284 TGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGT 124343 |||| ||||| || |||||||| | ||||||||||||||||||||| ||||| ||||||| Sbjct 17617 TGAAAGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATGTTGT 17558 Query 124344 ATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTT 124403 | |||||||||||||| ||||| || || || | ||| || || | || ||||||| Sbjct 17557 AAGTTTCTTCTTCTTGACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTTGTTT 17498 Query 124404 CTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGA 124463 | | ||||| ||| || ||||| | ||||| ||||| || |||||||| || || || | Sbjct 17497 CACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCACCAA 17438 Query 124464 ACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGA 124523 | | || ||||| ||| |||||||||||| ||||| ||||||||||| || ||||||| Sbjct 17437 ATACACCAGCTACACCTAACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCTTGGA 17378 Query 124524 AAACGA 124529 |||||| Sbjct 17377 AAACGA 17372 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124805 TGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATAT 124864 || || |||||||||||||| | ||||| || |||||||||||||||||||| || ||| Sbjct 13309 TGCAGACCGATAGCGTTTGAAGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAT 13250 Query 124865 AAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATA 124924 || || ||||| | ||||| || | ||| || |||||||| || ||||| || || || Sbjct 13249 AATAATGAACCAGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCAGCGATG 13190 Query 124925 AATGCAACGATGAAACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAAC 124984 || || | |||||| || | || || | ||| || ||||| | ||||||||| Sbjct 13189 AAAGCGATGATGAATACTGAAGTAGCAGTTAATAATGTAGGGATCATGATCACACCAAAC 13130 Query 124985 CAACCAACATAAATTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 ||||| | || | | ||| | || || || | |||||||||||| Sbjct 13129 CAACCGATGTATAAACGGTTTTCAGTAGAAGTGATCCACTCACAGAA 13083 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 124531 CATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACC 124590 ||| ||||||||||| ||||| ||||| | |||||||| |||||||| ||||| || || Sbjct 16261 CATGAAGTTGAAAGTTCCTGAAATACCTAAAGGCATACCGTCAGAGAAAGAACCTTGTCC 16202 Query 124591 AAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACA 124650 | ||||| | | ||||||||| ||||| | |||||||| || ||||| ||| Sbjct 16201 GATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGC 16142 Query 124651 GATCCAAGGACGCAT 124665 |||||||||||||| Sbjct 16141 AATCCAAGGACGCAT 16127 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 124662 GCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAA 124721 |||| ||||| | ||| |||| |||||||| | |||||||| | ||||| | | Sbjct 14815 GCATACCTAAACGGTAAGATAATTCCCACTCACGACCCATGTAACAGCAGATACCTAAGA 14756 Query 124722 GGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTG 124781 |||||| ||| | || || ||||||||||| || || ||||| ||||| | || | Sbjct 14755 AGAAGTGACAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGAAG 14696 Query 124782 CTGCTTCCCAGATTGGGTAGAA 124803 | |||||||| ||||||||||| Sbjct 14695 CAGCTTCCCAAATTGGGTAGAA 14674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578988499127360