Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq21 489 2e-133 >seq21 Length=95773 Score = 489 bits (542), Expect = 2e-133 Identities = 674/940 (72%), Gaps = 2/940 (0%) Strand=Plus/Minus Query 23435 TTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATT 23494 ||||||||||||||| || |||||| |||| | || | || || |||||||| Sbjct 41233 TTCGTGTGGTTGGTCTTGAGCAGCCATCCAAGCACGAATACCTTCATTTAATAAAATATT 41174 Query 23495 TTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAA 23554 ||| || ||||| || || || ||||||||||||||||| ||||| || || Sbjct 41173 TTTAGTATAGAAAGTTTCGAACTCTGGGTCTTCAGCAGCACGAATTTCTTGTGATACGAA 41114 Query 23555 ATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACC 23614 ||||||||||| | || ||||| | |||| | ||||| | ||| | ||| || || Sbjct 41113 GTCATAAGCACGTAAGTTTAGAGCTAAACCAACAACACCAATCGCAGACATCCATAGTCC 41054 Query 23615 CATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCC 23674 | || ||||| || |||||||||||||| | |||||| || || || ||||| || Sbjct 41053 TGTTACCGGAACTAATAACATAAAGAAGTGAAGCCAACGTTTGTTTGAGAAAGCAACACC 40994 Query 23675 GAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGT 23734 || ||||||||||| ||||| || || || ||||| || || || || || | ||||| Sbjct 40993 AAAAATTTGTGACCAGAAACGGTTCGCAGTTACCATAGAGTAAGTTTCTTCAGCTTGAGT 40934 Query 23735 GGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGAC 23794 | | || || || |||||||| || ||||||||| | | ||| || || || Sbjct 40933 TGGGTTAAATGCACGGAATGTGTTTGCACCATCACCATCTTCAAATAATGTGTTTTCAAC 40874 Query 23795 AGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCAT 23854 |||| | || ||||||||| | | | || | || | | ||||||||| |||||||| Sbjct 40873 AGTAGCACCGTGAATAGCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCAT 40814 Query 23855 ATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAAT 23914 |||||| ||||| | |||||||||||||| || |||| ||| | || || | ||| || Sbjct 40813 ATGGAATGGGTTTAATGTCCAGTTATGAAAACCTTGGAAGAACAAAATAAAACGGAAGAT 40754 Query 23915 CGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAG 23974 || |||||||| ||||| || |||||||||||| ||| ||||| || || || || | Sbjct 40753 AGCAGCAACACCAAAACTAGGTGCAAAGAACCAACCTGATTGTCCTAATGGGTAAATTAA 40694 Query 23975 GAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGAT 24034 |||||| || || || |||||||||||| | ||||||||||| |||||||| ||||| | Sbjct 40693 GAATACTGAAACAAAAACAGCAATAGGAGCTGAAAAAGCAATAGCATTGTAAGGACGTAA 40634 Query 24035 TCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACC 24094 | | |||||| | |||||| ||||||||||| || || || | |||| | ||| Sbjct 40633 GTTTACTGAACGTGCAATTTCAAATTGACGTAACATGAATCCAATTAAACCAAAAGAACC 40574 Query 24095 GTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTG 24154 || | ||||||||| | ||| | || || | ||| ||| || ||| || ||||| Sbjct 40573 ATGTAAAGCAACAAATGTCCATAAACCACCTAATTGACACCAACGAGTAAAATCACCTTG 40514 Query 24155 AGACTCAGGACCCCA-AAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGA 24213 || || |||||||| ||| | || || || || ||||| || ||||| || || | Sbjct 40513 AGCTTCTGGACCCCATAAGAATAATAA-TGAGTGTGCCATACTGTTTGCAGGTGTTGAAA 40455 Query 24214 CAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACC 24273 | || || || | |||||| ||| || | || ||| |||| | ||||| || |||| Sbjct 40454 CTGCAGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAACCCATGTGTATACC 40395 Query 24274 AACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAA 24333 | || ||||||| ||| ||||||| |||||| || | |||| || ||| |||| Sbjct 40394 ATGATGTTACAAAAGTTGTACCAGTAAACCAACCTCCTAGTGCAAAGTATGCACAAGGAA 40335 Query 24334 GAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATC 24373 ||| || || || |||||||| ||||| || || || || Sbjct 40334 AAAGAAGAAGACCTGACCAACCTACAAATACGAAACGGTC 40295 Score = 385 bits (426), Expect = 6e-102 Identities = 369/473 (78%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 26740 TCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGG 26799 || ||||| || || || ||||| | |||||| || || || | || | ||||||| Sbjct 17846 TCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATACCTAAGTTAGCACGG 17787 Query 26800 TTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTG 26859 |||| | ||| ||||| ||||| | |||||||| |||||||||| || || || ||| Sbjct 17786 TTGATGATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCAACAACTGATTGGTTG 17727 Query 26860 AAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATG 26919 |||||||||||||| || ||||||||||| || || | ||| | || |||||||| || Sbjct 17726 AAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATA 17667 Query 26920 CCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCA 26979 || ||||| ||||| ||||| | ||||||||| || ||||| ||||||||||| ||||| Sbjct 17666 CCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCG 17607 Query 26980 TATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCT 27039 ||||||||||| |||||||| ||||| || ||||| || ||||||||||| || |||||| Sbjct 17606 TATTGGAAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATGTTGTAAGTTTCTTCT 17547 Query 27040 TCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGT 27099 ||||||||||| || || || | ||| || || ||||||| || ||||||| | Sbjct 17546 TCTTGACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTTGTTTCACGGATTAAA 17487 Query 27100 GAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCA 27159 || || ||||| | ||||||||||||||||| | || ||||| ||||| ||||| Sbjct 17486 GATGAAGTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCACCAAATACACCAGCT 17427 Query 27160 ACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATAC 27212 ||||| | ||||||||| ||||||||||| || || ||||| || ||||| || Sbjct 17426 ACACCTAACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCTTGGAAAAC 17374 Score = 167 bits (184), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27490 TGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATAC 27549 || |||||||| || |||||| | || || || |||||||| ||||||||||| || || Sbjct 13309 TGCAGACCGATAGCGTTTGAAGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAT 13250 Query 27550 ATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATG 27609 | | |||||||| ||| || ||||| ||||| || ||||| || || || || |||||| Sbjct 13249 AATAATGAACCAGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCAGCGATG 13190 Query 27610 AATGCGACAATGAAG-CAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAA 27668 || |||| ||||| | || ||| || | ||| | ||| |||||||| | ||||| || Sbjct 13189 AAAGCGATGATGAATACTGA-AGTAGCAGTTAATAATGTAGGGATCATGATCACACCAAA 13131 Query 27669 CCAACCAACATACAAACGGTTGTTAGTTGATGTCACCCACTCACAGAAA 27717 |||||| | || |||||||| | ||| || || | ||||||||||||| Sbjct 13130 CCAACCGATGTATAAACGGTTTTCAGTAGAAGTGATCCACTCACAGAAA 13082 Score = 123 bits (136), Expect = 3e-23 Identities = 113/142 (80%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 27216 CATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACC 27275 |||| |||| ||||| || || ||||| | ||||||| | || |||||||||||||| || Sbjct 16261 CATGAAGTTGAAAGTTCCTGAAATACCTAAAGGCATACCGTCAGAGAAAGAACCTTGTCC 16202 Query 27276 GAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACA 27335 || ||| |||| || |||||| ||| | ||||| || ||||| ||||| || |||||| Sbjct 16201 GATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGC 16142 Query 27336 GATCCATGGACGCATACCTAAA 27357 ||||| |||||||| ||||| Sbjct 16141 AATCCAAGGACGCAT--CTAAA 16122 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27347 GCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGATGCCGATAA 27406 ||||||||||||| || || | |||||||||||| ||||| ||| |||| || | | Sbjct 14815 GCATACCTAAACGGTAAGATAATTCCCACTCACGACCCATGTAACAGCAGATACCTAAGA 14756 Query 27407 GGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATG 27466 |||||| | || | | |||| ||||||||||||| || ||||||||||| | || | Sbjct 14755 AGAAGTGACAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGAAG 14696 Query 27467 CTGCTTCCCAGATTGGGTAGAA 27488 | |||||||| ||||||||||| Sbjct 14695 CAGCTTCCCAAATTGGGTAGAA 14674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665483020045760