Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq723 96.9 4e-15 seq787 82.4 9e-11 >seq723 Length=331235 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||| || ||||||| | || ||||| || |||||||| ||| ||||||||| || Sbjct 27276 CTTTGCGCAGCGCCTGCTGGCCTTTGCCTGCGTGGAGGGCATCCACTTCTCCGGCAGCTT 27217 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||||||||| || ||||| ||||| |||||| || || Sbjct 27216 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTTATGCCGGGCCTCACCTTCTCTAACGA 27157 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG 65232 || || | | |||||||| || ||| || ||||| ||| Sbjct 27156 GCTCATCAGCAGGGATGAGGGCCTGCACACTGACTTTGCGGTG 27114 >seq787 Length=122967 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||| || |||||||| | || | || |||||||| ||||||||||| || || Sbjct 88211 CTTTGCGGAGCGCCTGGTGGCCTACGCCGCCGTGGAGGGCATCTTCTTCTCAGGCAGCTT 88152 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| || || |||||| || || Sbjct 88151 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTCACCTTCTCCAACGA 88092 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||| |||||||| || ||| Sbjct 88091 GCTCATCAGCCGCGATGAGGGCCTGCAC 88064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596559398659840