Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq21 381 7e-101 >seq21 Length=95773 Score = 381 bits (422), Expect = 7e-101 Identities = 376/486 (77%), Gaps = 0/486 (0%) Strand=Plus/Minus Query 7886 CAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTA 7945 |||||||||||||||||||||||||||| || || | ||| ||||||||||||||||||| Sbjct 17857 CAGATGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATACCTA 17798 Query 7946 AGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAA 8005 |||| || | ||| | | |||| ||||||| | | ||| | |||||||| Sbjct 17797 AGTTAGCACGGTTGATGATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCAACAA 17738 Query 8006 CTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAG 8065 |||||||||| ||||| || ||||||||||| || ||||| || ||||||| | || || Sbjct 17737 CTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAAGCAG 17678 Query 8066 TTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGT 8125 | ||||||| || ||||||||| | | ||| | ||||||||| | | | ||||| Sbjct 17677 TGAACCAAATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 17618 Query 8126 TAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTAT 8185 | || || || || ||||||||||| | ||||||||| || || || || || || || | Sbjct 17617 TGAAAGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATGTTGT 17558 Query 8186 AGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCT 8245 | || |||||||||||||| || || || || | ||| ||| || | ||||||||| | Sbjct 17557 AAGTTTCTTCTTCTTGACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTTGTTT 17498 Query 8246 CTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGA 8305 | | ||||| ||| || |||||||| ||||||||||||||| ||| | ||| ||||| | Sbjct 17497 CACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCACCAA 17438 Query 8306 ACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGA 8365 | | ||| ||||| ||| ||| |||||||| ||||||||||||||||| || ||||||| Sbjct 17437 ATACACCAGCTACACCTAACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCTTGGA 17378 Query 8366 ATACGA 8371 | |||| Sbjct 17377 AAACGA 17372 Score = 147 bits (162), Expect = 3e-30 Identities = 141/181 (78%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 8653 CCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAAT 8712 || |||||||| |||| ||||| |||||||||||||||||||||||||| || | ||| Sbjct 13303 CCGATAGCGTTTGAAGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTATAATAAT 13244 Query 8713 GAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCC 8772 ||||| | ||| || ||||| ||||| |||||||| || || |||||||| || || || Sbjct 13243 GAACCAGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCAGCGATGAAAGCG 13184 Query 8773 ACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCG 8832 | ||| || | || ||||| ||| || ||| ||||| | || |||||||||||| Sbjct 13183 ATGATGAATACTGAAGTAGCAGTTAATAATGTAGGGATCATGATCACACCAAACCAACCG 13124 Query 8833 A 8833 | Sbjct 13123 A 13123 Score = 105 bits (116), Expect = 8e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 8505 CATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAA-ATTCCAATAA 8563 ||||||||| ||||| ||||| ||||||| | |||||||||| ||| | || || | | Sbjct 14814 CATACCTAAACGGTAAGATAATTCCCACTCACGACCCATGTAA-CAGCAGATACCTAAGA 14756 Query 8564 GGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGG 8623 |||||| | | | || || || ||||| ||||| || |||||||||||||| | | Sbjct 14755 AGAAGTGACAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGAAG 14696 Query 8624 CAGCTTCCCAAATGGGATAGAA 8645 ||||||||||||| || ||||| Sbjct 14695 CAGCTTCCCAAATTGGGTAGAA 14674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615851868752960