Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq21 502 3e-137 >seq21 Length=95773 Score = 502 bits (556), Expect = 3e-137 Identities = 731/1028 (71%), Gaps = 16/1028 (2%) Strand=Plus/Plus Query 167011 TGGTTTGATGTCCTCGATGACTGGCT---TAAAAGGGATCGTTTTGTTTTTGTTGGCTGG 167067 |||||||||| | ||||||||| | | || || ||||| || ||||| || ||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGGTTACGTCAA---GACCGTTTCGTATTTGTAGGTTGG 40318 Query 167068 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACT 167127 || || |||||||||||||| ||| || |||| | || |||||| ||||||| || Sbjct 40319 TCAGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACA 40378 Query 167128 ACTTTCGTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGCGAAC 167187 ||||| || || |||||||| ||||| | || | ||| | || ||| ||| Sbjct 40379 ACTTTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAAC 40438 Query 167188 TTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCT- 167246 || | ||||| |||||| || || ||| | ||||| || || ||| || |||| Sbjct 40439 TTCTTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCATTA-TTATTCTT 40497 Query 167247 ATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGC 167306 ||||||||| ||| ||||||| ||||| | ||| ||| | || || | ||| | Sbjct 40498 ATGGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGAC 40557 Query 167307 TTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACT 167366 ||||| || | || || | |||| | | ||||| |||||| | || || |||||| | Sbjct 40558 ATTTGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAAT 40617 Query 167367 TGCTCGCCTGATTGGTA----TCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTG 167422 ||| || | ||| | ||||| ||||||||||||||||| || | |||||||| Sbjct 40618 TGCACGT----TCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTG 40673 Query 167423 CTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCC 167482 |||| || ||| || ||| | | || || | || ||| | ||||||||||| | Sbjct 40674 CTGTTTTTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCAC 40733 Query 167483 CGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACT 167542 | || || || || || |||||||| || | | ||| ||||||| || || |||| Sbjct 40734 CTAGTTTTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACT 40793 Query 167543 GGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTT 167602 ||||| | || ||||| |||||||||||||| || ||| | | |||| ||| || | | Sbjct 40794 GGACATTAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTAT 40853 Query 167603 CTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACA 167662 ||| || || |||| ||| || || || || || | |||||||||||| ||||||| Sbjct 40854 GTGCTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACA 40913 Query 167663 CTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACC 167722 | || ||||| | | ||||| | ||||| ||||| || ||||| || || |||| Sbjct 40914 CATTCCGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACC 40973 Query 167723 GATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTA 167782 | |||||||| || || || || |||||||| |||||||| |||||||| ||||||| Sbjct 40974 GTTTCTGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTA 41033 Query 167783 TGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTC 167842 ||||||| ||||| || | ||||| |||| || ||||||| | ||||| | |||| Sbjct 41034 TGTTATTAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTC 41093 Query 167843 TTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGT 167902 | || | |||||||| || ||||| || ||||| || | || || || || ||||||| Sbjct 41094 TAAACTTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGT 41153 Query 167903 TTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCAC 167962 | |||||||||||||||||||| || | | ||||||||| |||| || ||| | || Sbjct 41154 TCGAAACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTG 41213 Query 167963 CTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACG 168022 || || ||||| || || || || ||||| || ||||| | || || || |||| Sbjct 41214 CTCAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACG 41273 Query 168023 CACTATAA 168030 | |||||| Sbjct 41274 CTCTATAA 41281 Score = 392 bits (434), Expect = 4e-104 Identities = 367/467 (79%), Gaps = 0/467 (0%) Strand=Plus/Plus Query 166273 GTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGG 166332 || ||||||||||| || || ||||| ||||| || ||||| ||| | || || ||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 166333 GTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTT 166392 ||||||||||| || || |||||||||||| || |||||||| ||| | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 166393 AGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAA 166452 | || || ||||||| |||||| ||| | || ||||| ||||| |||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 166453 ACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 166512 || ||||||||||||||||| || |||||||| |||||||| ||||||||||||||||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 166513 TTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 166572 ||||||||||| || || || ||||||||| | ||||| ||||| ||||| || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 166573 TTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 166632 ||||| || | || | || || ||||| |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 166633 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCT 166692 || | ||||| || |||||||| || ||||| ||||| || | | ||||| ||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 166693 GGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCC 166739 | ||||||||||||||||| || |||||||| ||||||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCC 17840 Score = 140 bits (154), Expect = 4e-28 Identities = 153/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 165796 AACCGTCTGTATGTCGGTTGGTTTGGTACGCTGATGATTCCAACTCTGTTGGCAGCAACT 165855 |||||| | || |||||||||||||| | | ||||| || || | || | || ||| Sbjct 13110 AACCGTTTATACATCGGTTGGTTTGGTGTGATCATGATCCCTACATTATTAACTGCTACT 13169 Query 165856 ATCTG-CTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 165914 || | |||||| |||| |||||||||||||| || || || ||||| || |||||||| Sbjct 13170 -TCAGTATTCATCATCGCTTTCATCGCTGCTCCTCCAGTAGATATCGATGGTATCCGTGA 13228 Query 165915 ACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 165974 || || ||||||| | | || || |||||||||||||||||||| || ||||| | Sbjct 13229 GCCAGTTTCTGGTTCATTATTATACGGAAACAACATCATCTCTGGTGCTGTAGTTCCTAC 13288 Query 165975 TTCCAACGCAATTGGTCTACA 165995 ||| ||||| || ||||| || Sbjct 13289 TTCAAACGCTATCGGTCTGCA 13309 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 165997 TTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTC 166056 ||||| || || |||||||| || || | || || ||| | || ||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 166057 CAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAA 166116 ||| | | || | |||||| | | || |||| ||||||||||||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 166117 CTGTCTTACCGTCTAGGTATGC 166138 | ||||||||| ||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 ||||||||||||||| || ||||| ||| ||||||| |||| || ||||||||||| || Sbjct 31906 TCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATAGGCCGTAGGTTCAAGTC 31847 Query 18189 CTACCTGGGGAG 18200 |||||||||||| Sbjct 31846 CTACCTGGGGAG 31835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561238402659200