Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq960 114 2e-20 seq23 114 2e-20 seq78 104 3e-17 seq1064 102 1e-16 seq1211 98.7 1e-15 seq1203 93.3 6e-14 seq275 89.7 7e-13 seq61 89.7 7e-13 >seq960 Length=371212 Score = 114 bits (126), Expect = 2e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391 || || ||||| ||||| ||||| || || ||||||||| | || ||||| || ||| | Sbjct 345478 TGCGTGGGTGTGTGGCAGAATGACCGCGTGGAGATTATCGCAAACGACCAGGGCAACAGG 345537 Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451 || || || || || || ||||| ||||| | || || ||| | || ||||| ||||| Sbjct 345538 ACCACACCGTCCTATGTGGCCTTCACAGACACAGAGCGCCTCATCGGCGATGCAGCAAAG 345597 Query 195452 AATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGG 195507 || ||| || |||||||| ||| || ||||||||||| ||||| | ||||| Sbjct 345598 AACCAGGTGGCCATGAACCCGCGCAACACCGTCTTTGACGCAAAGCGCATGATTGG 345653 Score = 87.8 bits (96), Expect = 2e-12 Identities = 249/383 (65%), Gaps = 0/383 (0%) Strand=Plus/Plus Query 196217 AGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAG 196276 |||||||| ||||| || || || | || || ||||| ||||| || ||||| Sbjct 347627 AGGAAGTGCATGGACCCCGTGGAGAAGGTGCTCAAGGACGCCAAGATCGACAAGTCCTCC 347686 Query 196277 GTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTT 196336 || | || | || || ||||| || || ||||| || || || | || ||| |||| Sbjct 347687 GTGCACGAGGTGGTGCTGGTGGGCGGCTCCACCCGCATCCCAAAAGTGCAGCAGCTGCTG 347746 Query 196337 TCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCT 196396 |||||||| || || | ||| | |||||||| ||||| || || || Sbjct 347747 CAGGATTTCTTCAACGGCAAGGAGCTGTGCAAGTCCATCAACCCAGATGAGGCTGTAGCA 347806 Query 196397 TATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGAT 196456 || || || || || ||||| || || || | || | | | | || || || || Sbjct 347807 TACGGCGCAGCAGTGCAGGCAGCCATCCTGACTGGCGCAGGCGGCGAGAAGGTGCAGGAC 347866 Query 196457 CTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATG 196516 || ||||| || ||||| || || | | |||| |||| ||||| || || || ||| Sbjct 347867 CTGCTGCTGCTGGATGTGGCGCCGCTGAGCATGGGCATTGAGACAGCTGGCGGCGTGATG 347926 Query 196517 ACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACG 196576 || | ||| | ||||| || | || ||||||||||| || || || ||||| Sbjct 347927 ACGGTGCTGATTCCACGCAACACCACAGTGCCTACTAAGAAGGAGCAGGTGTTCTCAACC 347986 Query 196577 TATTCCGATAATCAACCAGGTGT 196599 | | | || || || || || || Sbjct 347987 TTTGCAGACAACCAGCCTGGCGT 348009 Score = 86.0 bits (94), Expect = 8e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 196694 GGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACA 196753 || || |||||||| || || |||||| || ||||| || || || || ||||| || Sbjct 348464 GGCGTGCCACAGATCAACGTGGTCTTCGACATCGACGCCAACGGCATCCTCAACGTGACT 348523 Query 196754 GCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGG 196813 || ||||||||| | | ||||| | ||||| ||| || ||||||||||||||| Sbjct 348524 GCCGAGGACAAGACCACCGGCAAGAAGAACAAGATCACGATCACAAATGACAAGGGGCGG 348583 Query 196814 CTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGA 196848 || ||||| || || || || ||||| || || Sbjct 348584 CTGAGCAAGGACGACATCGAGCGCATGGTGCAGGA 348618 >seq23 Length=225717 Score = 114 bits (126), Expect = 2e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391 || || ||||| ||||| ||||| || || ||||||||| | || ||||| || ||| | Sbjct 58730 TGCGTGGGTGTGTGGCAGAATGACCGCGTGGAGATTATCGCAAACGACCAGGGCAACAGG 58789 Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451 || || || || || || ||||| ||||| | || || ||| | || ||||| ||||| Sbjct 58790 ACCACACCGTCCTATGTGGCCTTCACAGACACAGAGCGCCTCATCGGCGATGCAGCAAAG 58849 Query 195452 AATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGG 195507 || ||| || |||||||| ||| || ||||||||||| ||||| | ||||| Sbjct 58850 AACCAGGTGGCCATGAACCCGCGCAACACCGTCTTTGACGCAAAGCGCATGATTGG 58905 Score = 87.8 bits (96), Expect = 2e-12 Identities = 249/383 (65%), Gaps = 0/383 (0%) Strand=Plus/Plus Query 196217 AGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAG 196276 |||||||| ||||| || || || | || || ||||| ||||| || ||||| Sbjct 60879 AGGAAGTGCATGGACCCCGTGGAGAAGGTGCTCAAGGACGCCAAGATCGACAAGTCCTCC 60938 Query 196277 GTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTT 196336 || | || | || || ||||| || || ||||| || || || | || ||| |||| Sbjct 60939 GTGCACGAGGTGGTGCTGGTGGGCGGCTCCACCCGCATCCCAAAAGTGCAGCAGCTGCTG 60998 Query 196337 TCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCT 196396 |||||||| || || | ||| | |||||||| ||||| || || || Sbjct 60999 CAGGATTTCTTCAACGGCAAGGAGCTGTGCAAGTCCATCAACCCAGATGAGGCTGTAGCA 61058 Query 196397 TATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGAT 196456 || || || || || ||||| || || || | || | | | | || || || || Sbjct 61059 TACGGCGCAGCAGTGCAGGCAGCCATCCTGACTGGCGCAGGCGGCGAGAAGGTGCAGGAC 61118 Query 196457 CTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATG 196516 || ||||| || ||||| || || | | |||| |||| ||||| || || || ||| Sbjct 61119 CTGCTGCTGCTGGATGTGGCGCCGCTGAGCATGGGCATTGAGACAGCTGGCGGCGTGATG 61178 Query 196517 ACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACG 196576 || | ||| | ||||| || | || ||||||||||| || || || ||||| Sbjct 61179 ACGGTGCTGATTCCACGCAACACCACAGTGCCTACTAAGAAGGAGCAGGTGTTCTCAACC 61238 Query 196577 TATTCCGATAATCAACCAGGTGT 196599 | | | || || || || || || Sbjct 61239 TTTGCAGACAACCAGCCTGGCGT 61261 Score = 86.0 bits (94), Expect = 8e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 196694 GGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACA 196753 || || |||||||| || || |||||| || ||||| || || || || ||||| || Sbjct 61716 GGCGTGCCACAGATCAACGTGGTCTTCGACATCGACGCCAACGGCATCCTCAACGTGACT 61775 Query 196754 GCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGG 196813 || ||||||||| | | ||||| | ||||| ||| || ||||||||||||||| Sbjct 61776 GCCGAGGACAAGACCACCGGCAAGAAGAACAAGATCACGATCACAAATGACAAGGGGCGG 61835 Query 196814 CTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGA 196848 || ||||| || || || || ||||| || || Sbjct 61836 CTGAGCAAGGACGACATCGAGCGCATGGTGCAGGA 61870 >seq78 Length=354265 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 171952 CAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTT 172011 || || ||||| || ||||| || || ||||| || || || ||||| || || ||||| Sbjct 344465 CAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGCCTCATCTTTGCAGGCAAGCAGCTG 344524 Query 172012 GAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTT 172071 || ||||| || ||| | |||||||||||| ||||||||||||| || || ||||| || Sbjct 344525 GAGGATGGCCGCACCTTGGCTGATTACAACATTCAAAAGGAGTCAACGCTGCACCTCGTG 344584 Query 172072 CT 172073 || Sbjct 344585 CT 344586 >seq1064 Length=71438 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 |||||| || || || ||||| || || || |||||||| || ||||| || ||||| || Sbjct 27827 AGGCATCCCTCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCG 27886 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082 ||||| |||||||||||| | || |||||||| || || ||||| || || | || || Sbjct 27887 CACCCTGGCTGATTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCG 27946 Query 172083 GGGTGG 172088 ||||| Sbjct 27947 CGGTGG 27952 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 |||||| || || || ||||| || || || || ||||| || ||||| || ||||| || Sbjct 25740 AGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCG 25799 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 ||||| ||||| |||||| | || ||||||||||| || ||||| || || Sbjct 25800 CACCCTGGCTGACTACAACATCCAGAAGGAGTCTACACTGCACCTGGTGCT 25850 >seq1211 Length=79214 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| ||||| || || |||||||||||||| ||||| || Sbjct 78787 ATGCAGATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTCGAGGTGGAGTCTTCC 78846 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| || |||| ||||||||| || ||||| || Sbjct 78847 GACACCATCGAGAATGTCAAGAGCAAGATTCAGGACAAGGAGGG 78890 >seq1203 Length=119104 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || ||||||||||| ||||| ||||| || Sbjct 90215 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 90156 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| || |||| | |||||||| || ||||| || Sbjct 90155 GACACCATCGAGAATGTCAAGTCTAAGATTCAGGACAAGGAGGG 90112 >seq275 Length=238179 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| || || || || |||||| |||| |||||||||||||| || | | ||||| Sbjct 104595 CCCGAGGAGATCTCCTCCATGGTGCTGATCAAGATGAAGGAGACCGCACAGGCCTTCATC 104536 Query 195692 GGTAAA-ACT-----GTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCA 195745 || | || ||||| | ||||| |||||||| ||||||||||||| || || Sbjct 104535 GGCCAGGACAAGGTGGTGAAGAAGGCAGTGGTGACTGTCCCTGCTTACTTCAACGACTCC 104476 Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 || || ||||| || ||||| || | | ||||| || || | || | || ||| Sbjct 104475 CAGCGCCAGGCCACCAAGGATGCAGGCACCATTGCAGGCCTGGAGGTGCTGCGCATCATC 104416 Query 195806 AATGAACCAACAGCGGCTGCAATTGC 195831 || || || || || || || ||||| Sbjct 104415 AACGAGCCCACCGCAGCAGCCATTGC 104390 >seq61 Length=469512 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| || || || || |||||| |||| |||||||||||||| || | | ||||| Sbjct 99896 CCCGAGGAGATCTCCTCCATGGTGCTGATCAAGATGAAGGAGACCGCACAGGCCTTCATC 99955 Query 195692 GGTAAA-ACT-----GTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCA 195745 || | || ||||| | ||||| |||||||| ||||||||||||| || || Sbjct 99956 GGCCAGGACAAGGTGGTGAAGAAGGCAGTGGTGACTGTCCCTGCTTACTTCAACGACTCC 100015 Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 || || ||||| || ||||| || | | ||||| || || | || | || ||| Sbjct 100016 CAGCGCCAGGCCACCAAGGATGCAGGCACCATTGCAGGCCTGGAGGTGCTGCGCATCATC 100075 Query 195806 AATGAACCAACAGCGGCTGCAATTGC 195831 || || || || || || || ||||| Sbjct 100076 AACGAGCCCACCGCAGCAGCCATTGC 100101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657851150552960