Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq21 315 2e-81 >seq21 Length=95773 Score = 315 bits (348), Expect = 2e-81 Identities = 365/490 (74%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 42793 GTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGC 42852 || ||||| ||||||||||||||||||||||| |||||||| ||| | ||||| || || Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 42853 GTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTG 42912 ||||||||||| || || ||||| |||||||| ||| | || || || ||| | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 42913 CGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAG 42972 |||||||| |||||||||||| || | || ||||| ||||||||||| || || Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 42973 ACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCG 43032 ||||| ||||| || || || || ||||||||||| || | ||||||||||| || || Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 43033 TTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGG 43092 || || || ||| || || |||||||| | || |||||||| ||||| || |||||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 43093 TTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAA 43152 |||||| || | || | |||||||| || ||| | || ||||| ||||| |||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 43153 TCACTTGTTGATAATCAGAA--TCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTG 43210 ||| |||||||| ||| || || ||| | || |||||||| || | || |||| Sbjct 17734 TCAGTTGTTGAT--TCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTG 17791 Query 43211 CCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTG 43270 | ||| | || | || || |||||||| || || || || |||||||| | || | | Sbjct 17792 CTAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAG 17851 Query 43271 CATCCGTGGA 43280 |||| || || Sbjct 17852 CATCTGTAGA 17861 Score = 118 bits (130), Expect = 3e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42289 TTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTG 42348 || ||| | ||| | ||||| ||| | |||||| | || | || |||||||||||| | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 42349 ATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTTATTGTCGCTTTCATTGCTGCCCCT 42408 ||||| || | | ||||||| | || || |||||||||| ||||| ||| Sbjct 13143 ATGATCCCTACATTATTAACTGCTACTTCAGTATTCATCATCGCTTTCATCGCTGCTCCT 13202 Query 42409 CCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAAC 42468 || ||||| || ||||| || ||||| || || ||||| || | | || || |||||| Sbjct 13203 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAAC 13262 Query 42469 ATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACAT 42516 |||||||||||||| || || |||| ||||| || || || ||| Sbjct 13263 ATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCAT 13310 Score = 96.9 bits (106), Expect = 1e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42654 GATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTT 42713 |||| | || ||||| ||| ||||||||||| || || || || || ||||| || || Sbjct 16126 GATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATT 16185 Query 42714 CCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGG 42773 | | |||| || | || ||||||||||| || || || |||||| | || ||||| || Sbjct 16186 CATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGG 16245 Query 42774 TACGTTCAACTTCATG 42789 || |||||||||||| Sbjct 16246 AACTTTCAACTTCATG 16261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143530468309664