Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq21 246 9e-61 >seq21 Length=95773 Score = 246 bits (272), Expect = 9e-61 Identities = 345/484 (71%), Gaps = 0/484 (0%) Strand=Plus/Minus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 ||||||||||| | ||| ||||| ||||| ||||| |||||||||||||| | || | | Sbjct 17855 GATGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATACCTAAG 17796 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993 ||||| ||||| | | ||||||||||| || | || | ||| || ||| Sbjct 17795 TTAGCACGGTTGATGATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCAACAACT 17736 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 || ||||| ||||| ||||| || ||||| || ||||| || | ||||| | || || Sbjct 17735 GATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTG 17676 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| || || ||||| ||||||| ||| | ||||| || | ||||| ||| || Sbjct 17675 AACCAAATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 17616 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 ||| || || || || ||||| | |||||||| |||||||| || || || || || Sbjct 17615 AAAGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATGTTGTAA 17556 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233 || ||||| ||||| || || || || || | || || | | || || ||||| Sbjct 17555 GTTTCTTCTTCTTGACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTTGTTTCA 17496 Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 || | || |||||||| || ||||||||||||| ||| | | ||||| || Sbjct 17495 CGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCACCAAAT 17436 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || ||||| ||||| ||| ||||| |||||||| || || |||||||| |||||||| Sbjct 17435 ACACCAGCTACACCTAACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCTTGGAAA 17376 Query 26354 ACGA 26357 |||| Sbjct 17375 ACGA 17372 Score = 131 bits (144), Expect = 5e-26 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 26632 ATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTA 26691 ||| || ||||| ||||| || | || || || || || || || || ||||||||||| Sbjct 13310 ATGCAGACCGATAGCGTTTGAAGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTA 13251 Query 26692 CATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGAT 26751 | ||| || || |||||||||||||| || ||||| |||||||| || || || ||||| Sbjct 13250 TAATAATGAACCAGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCAGCGAT 13191 Query 26752 GAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAA-GCAGGGTATCATAAGCACCCCGA 26810 ||| || | || || || ||| || | | ||| | |||| ||||| | ||| || | Sbjct 13190 GAAAGCGATGATGAATACTGAAGTAGCAGTTAATAATGTAGGG-ATCATGATCACACCAA 13132 Query 26811 ACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 |||| || | || | |||||| |||||| || | ||||||||| || Sbjct 13131 ACCAACCGATGTATAAACGGTTTTCAGTAGAAGTGATCCACTCACAGAA 13083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147709600418560