Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq21 300 5e-77 >seq21 Length=95773 Score = 300 bits (332), Expect = 5e-77 Identities = 357/484 (74%), Gaps = 0/484 (0%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 |||| |||||||||| || ||||||||||||||||| |||||||| ||||||||||||| Sbjct 17857 CAGATGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATACCTA 17798 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | ||| | | |||||||| || | || ||| | | || || | Sbjct 17797 AGTTAGCACGGTTGATGATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCAACAA 17738 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 |||| ||||| ||||| ||||| || ||||| ||||||||||| || ||||| | | | Sbjct 17737 CTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAAGCAG 17678 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| || || | ||| || ||||| | | |||||||||| | ||| |||| Sbjct 17677 TGAACCAAATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 17618 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||| ||||| ||||| || |||| | |||||||||||||||||| ||||||||||| | Sbjct 17617 TGAAAGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATGTTGT 17558 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 |||| || |||| ||||| || || || || | ||| ||||| |||| || || | Sbjct 17557 AAGTTTCTTCTTCTTGACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTTGTTT 17498 Query 40888 CCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAA 40947 | || || | || |||||||| | ||||||||||||| || || | |||||||| Sbjct 17497 CACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCACCAA 17438 Query 40948 AGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGA 41007 | || || || || || | ||| ||||| |||||||| |||||||| ||||| ||||||| Sbjct 17437 ATACACCAGCTACACCTAACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCTTGGA 17378 Query 41008 AGAC 41011 | || Sbjct 17377 AAAC 17374 Score = 172 bits (190), Expect = 2e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41288 ATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTA 41347 ||| || ||||| ||||| || | ||||| ||||| ||||| || || ||||| ||||| Sbjct 13310 ATGCAGACCGATAGCGTTTGAAGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTA 13251 Query 41348 CATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGAT 41407 | ||| || || ||||| |||||||| || ||||| |||||||| || || || ||||| Sbjct 13250 TAATAATGAACCAGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCAGCGAT 13191 Query 41408 AAAGGCGATTATGAAACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAA 41467 || ||||| ||||| || |||||||||| ||||| || ||||| | ||||||||| Sbjct 13190 GAAAGCGATGATGAATACTGAAGTAGCAGTTAATAATGTAGGGATCATGATCACACCAAA 13131 Query 41468 CCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 |||||| | ||||| ||||| || || ||||| ||| | ||| || Sbjct 13130 CCAACCGATGTATAAACGGTTTTCAGTAGAAGTGATCCACTCACAGAA 13083 Score = 91.5 bits (100), Expect = 4e-14 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41015 CATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACC 41074 |||||||||||| ||||| || |||||||||||||| |||||||||||||| || || Sbjct 16261 CATGAAGTTGAAAGTTCCTGAAATACCTAAAGGCATACCGTCAGAGAAAGAACCTTGTCC 16202 Query 41075 GAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAA 41134 || || || | | ||||||||| ||| |||| | ||| || | ||| || ||| Sbjct 16201 GATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGC 16142 Query 41135 TATCCATGGTCTCAT 41149 ||||| || | ||| Sbjct 16141 AATCCAAGGACGCAT 16127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143700065554512