Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq21 363 2e-95 >seq21 Length=95773 Score = 363 bits (402), Expect = 2e-95 Identities = 372/482 (77%), Gaps = 3/482 (1%) Strand=Plus/Minus Query 67374 GGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCC-AAGTCCTGCTCTGTTAAG 67432 |||||||||||||||||||| ||||||||||||||||| || |||| || | ||| | Sbjct 17840 GGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATACCTAAGTTA-GCACGGTTGAT 17782 Query 67433 GATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGACGGATTGGTTGAAGTT 67492 |||||| ||||| || | || ||| || ||||| || |||||||||||||| Sbjct 17781 GATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCAACAACTGATTGGTTGAAGTT 17722 Query 67493 GAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGAC 67552 ||||||||| |||||||| ||||||||||| | ||| | ||||||||||| || | || Sbjct 17721 GAAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCTAC 17662 Query 67553 CACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTG 67612 || || | ||||| | ||||||||| | | |||||||||||||| || || || Sbjct 17661 AACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTG 17602 Query 67613 GAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTG 67672 |||||| || ||||| ||||| || || || || || ||||||||||| ||||||||||| Sbjct 17601 GAAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATGTTGTAAGTTTCTTCTTCTTG 17542 Query 67673 TCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGA 67732 ||||| ||||| || | ||| || || | ||||| ||||| | ||| | ||| || Sbjct 17541 ACCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGA 17482 Query 67733 AGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCC 67792 |||||| | ||||||||||||||| || | ||||||||| |||||||| ||||| || Sbjct 17481 AGTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCACCAAATACACCAGCTACACC 17422 Query 67793 AAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGANCATGTA-GT 67851 | ||| ||||| ||||||||||| ||||| || || |||||||| |||| | ||| || Sbjct 17421 TAACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCTTGGAAAACGATCCAGTATGT 17362 Query 67852 TA 67853 || Sbjct 17361 TA 17360 Score = 145 bits (160), Expect = 9e-30 Identities = 169/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 68118 TGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAC 68177 || |||||||| ||||||||| ||||||| ||||||||||| ||||||||||| ||||| Sbjct 13309 TGCAGACCGATAGCGTTTGAAGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAT 13250 Query 68178 ATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATG 68237 | | ||||| | ||| || || | ||||||||||||||| |||||||| || || ||| Sbjct 13249 AATAATGAACCAGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCAGCGATG 13190 Query 68238 AATGCAATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCG 68294 || || |||||||| |||| || | | | || ||| ||||| | |||||| Sbjct 13189 AAAGCGATGATGAATACTGAAGTAGCAGTT---AATAATGTAGGGATCATGATCACACCA 13133 Query 68295 AACCAACCAACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 |||||||| | || | || || ||| || |||| ||| | ||| Sbjct 13132 AACCAACCGATGTATAAACGGTTTTCAGTAGAAGTGATCCACTCACA 13086 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 67844 CATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACC 67903 |||| |||| ||||| || |||||||| | |||||| ||||||||||||||||||| || Sbjct 16261 CATGAAGTTGAAAGTTCCTGAAATACCTAAAGGCATACCGTCAGAGAAAGAACCTTGTCC 16202 Query 67904 GAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACA 67963 || ||| |||| | ||| ||||| || || | ||||| |||||||| |||||| Sbjct 16201 GATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGC 16142 Query 67964 GATCCAAGGACGCAT 67978 |||||||||||||| Sbjct 16141 AATCCAAGGACGCAT 16127 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 67975 GCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCGATAA 68034 ||||||| | ||||||||| | |||||||| |||||| ||| ||| || | | Sbjct 14815 GCATACCTAAACGGTAAGATAATTCCCACTCACGACCCATGTAACAGCAGATACCTAAGA 14756 Query 68035 GGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTG 68094 |||||| | || | | |||| |||| ||||| || || ||||||||||||| || | Sbjct 14755 AGAAGTGACAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGAAG 14696 Query 68095 CTGCTTCCCAGATAGGATAGAA 68116 | |||||||| || || ||||| Sbjct 14695 CAGCTTCCCAAATTGGGTAGAA 14674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566937505202880