Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq21 547 8e-151 >seq21 Length=95773 Score = 547 bits (606), Expect = 8e-151 Identities = 739/1026 (72%), Gaps = 10/1026 (1%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 |||| || || |||||||| || | |||||||| |||||||| || ||| || |||| Sbjct 41282 ATTATAGAGCGTTACCACGAGGTAATACTTCTTCAGGGAATACTAAACGTTCGTGTGGTT 41223 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 | || || |||| ||| ||||||| ||||||||| |||| ||| || || || |||| Sbjct 41222 GGTCTTGAGCAGCCATCCAAGCACGAATACCTTCATTTAATAAAATATTTTTAGTATAGA 41163 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | || ||||||||||||||||| || || | || ||||| ||||| ||||||||||||| Sbjct 41162 AAGTTTCGAACTCTGGGTCTTCAGCAGCACGAATTTCTTGTGATACGAAGTCATAAGCAC 41103 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | | ||| ||||| | ||||| || ||| || | | |||| || || | || |||| Sbjct 41102 GTAAGTTTAGAGCTAAACCAACAACACCAATCGCAGACATCCATAGTCCTGTTACCGGAA 41043 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 | || ||||||||||| || | ||| | || || || |||| |||||| || || | Sbjct 41042 CTAATAACATAAAGAAGTGAAGCCAACGTTTGTTTGAGAAAGCAACACCAAAAATTTGTG 40983 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 ||||||| ||||| ||||| ||||| |||||||||||||| ||||||| | || |||| Sbjct 40982 ACCAGAAACGGTTCGCAGTTACCATAGAGTAAGTTTCTTCAGCTTGAGTTGGGTTAAATG 40923 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| |||||||| |||||||||||| | | || || || || ||| |||| | Sbjct 40922 CACGGAATGTGTTTGCACCATCACCATCTTCAAATAATGTGTTTTCAACAGTAGCACCGT 40863 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| ||| | | || ||| |||| | | ||| || |||||||||||||| || |||| Sbjct 40862 GAATAGCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCATATGGAATGGGT 40803 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 | || ||||||||||| || ||||| | ||| | || || || ||||| || | || | Sbjct 40802 TTAATGTCCAGTTATGAAAACCTTGGAAGAACAAAATAAAACGGAAGATAGCAGCAACAC 40743 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| ||||| || | ||||| || | || || || Sbjct 40742 CAAAACTAGGTGCAAAGAACCAACCTGATTGTCCTAATGGGTAAATTAAGAATACTGAAA 40683 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGA----TACCGATG 67241 |||||||||| |||||| | || || |||||||||||||| ||||| | ||| || Sbjct 40682 CAAAAACAGCAATAGGAGCTGAAAAAGCAATAGCATTGTAAGGACGTAAGTTTACTGA-- 40625 Query 67242 AGACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGC 67301 |||||| | |||||| || || | |||||| ||||||| | | |||| || || | Sbjct 40624 --ACGTGCAATTTCAAATTGACGTAACATGAATCCAATTAAACCAAAAGAACCATGTAAA 40567 Query 67302 GCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCA 67361 || ||||| |||| | || || | ||| ||| || ||||| || |||| || Sbjct 40566 GCAACAAATGTCCATAAACCACCTAATTGACACCAACGAGTAAAATCACCTTGAGCTTCT 40507 Query 67362 GGACCCCA-AAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGC 67420 |||||||| ||| | || || || || ||||| | ||||| ||||| || || || Sbjct 40506 GGACCCCATAAGAATAATAA-TGAGTGTGCCATACTGTTTGCAGGTGTTGAAACTGCAGC 40448 Query 67421 TGTGAGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGT 67480 || | || ||| ||| || | ||| || || | || || || ||||| ||| Sbjct 40447 AGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAACCCATGTGTATACCATGATGT 40388 Query 67481 GACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAG 67540 ||||| || |||||||||| ||| || || | ||| | || ||| ||||||||||| Sbjct 40387 TACAAAAGTTGTACCAGTAAACCAACCTCCTAGTGCAAAGTATGCACAAGGAAAAAGAAG 40328 Query 67541 TAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGACATC 67600 || || |||||||| ||||| || || || ||| | | |||||||||| | |||| Sbjct 40327 AAGACCTGACCAACCTACAAATACGAAACGGTCTTGACGTAACCAGTCATCAGCGTCATC 40268 Query 67601 GAACCA 67606 ||||| Sbjct 40267 AAACCA 40262 Score = 351 bits (388), Expect = 1e-91 Identities = 358/467 (77%), Gaps = 0/467 (0%) Strand=Plus/Minus Query 67855 GGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGGTTGAGA 67914 ||||||||||| |||||||| || ||||||||||||||||| || ||| ||||||| Sbjct 17840 GGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATACCTAAGTTAGCACGGTTGATG 17781 Query 67915 ACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTTGAAGTTG 67974 | ||| ||||| || | ||| ||| ||||| | || |||||||||||| Sbjct 17780 ATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCAACAACTGATTGGTTGAAGTTG 17721 Query 67975 AAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATACCAACG 68034 ||||| || |||||||| ||||| || || ||| | ||||||||||| ||||| || Sbjct 17720 AAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCTACA 17661 Query 68035 ACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGG 68094 || ||||| ||||| | ||||||||| | ||||| ||||||||||| || || || ||| Sbjct 17660 ACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTGG 17601 Query 68095 AAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGA 68154 ||||| | |||||| ||||| || ||||| || || ||||||||||| |||||||||||| Sbjct 17600 AAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATGTTGTAAGTTTCTTCTTCTTGA 17541 Query 68155 CCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAA 68214 ||||| ||||| || | ||| || || ||||||| |||||||| | | || ||| Sbjct 17540 CCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAA 17481 Query 68215 GTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCG 68274 ||||| | ||||| ||||| ||| ||| | || ||||||||||| ||||| || || Sbjct 17480 GTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCACCAAATACACCAGCTACACCT 17421 Query 68275 AGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACAC 68321 | ||| ||||| |||||||| || ||||| || || |||||||| || Sbjct 17420 AACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCTTGGAAAAC 17374 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68599 TGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATAC 68658 || ||||| || || |||||| ||||||| ||||||||||| ||||||||||| || || Sbjct 13309 TGCAGACCGATAGCGTTTGAAGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAT 13250 Query 68659 AGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATG 68718 | | |||||||| ||| || ||||| ||||||||||| || || || |||||||||||| Sbjct 13249 AATAATGAACCAGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCAGCGATG 13190 Query 68719 AAGGCGACGATGAA-ACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAA 68777 || |||| |||||| || || || || | | | ||||||||||| | || || || Sbjct 13189 AAAGCGATGATGAATACTGA-AGTAGCAGTTAATAATGTAGGGATCATGATCACACCAAA 13131 Query 68778 CCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 |||||| | ||| | ||||| || || ||||| | ||| || ||||| Sbjct 13130 CCAACCGATGTATAAACGGTTTTCAGTAGAAGTGATCCACTCACAGAA 13083 Score = 122 bits (134), Expect = 1e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 68325 CATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACC 68384 |||| |||||||||| || ||||| || | |||||| |||||||||| |||||||| || Sbjct 16261 CATGAAGTTGAAAGTTCCTGAAATACCTAAAGGCATACCGTCAGAGAAAGAACCTTGTCC 16202 Query 68385 GAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACA 68444 || ||| |||| | ||| || || | || |||||||| ||||||||||| || ||| Sbjct 16201 GATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGC 16142 Query 68445 GATCCAAGGACGCAT 68459 |||||||||||||| Sbjct 16141 AATCCAAGGACGCAT 16127 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 35506 TATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGC 35565 |||| |||||||||||||| ||||||||||| || |||| ||||||| ||| ||||| | Sbjct 31830 TATATCTCCCCAGGTAGGACTTGAACCTACGGCCTATCGGTTAACAGCCGACCGCTCTAC 31889 Query 35566 CGCTGAGCTACTGAGGATTGAG 35587 | ||||||||||||||||| || Sbjct 31890 CACTGAGCTACTGAGGATTTAG 31911 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 68456 GCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAGATACCAATCA 68515 ||||||| | ||| || || | |||||| ||||| |||||||| ||||||| | | Sbjct 14815 GCATACCTAAACGGTAAGATAATTCCCACTCACGACCCATGTAACAGCAGATACCTAAGA 14756 Query 68516 GGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTG 68575 ||||||| | | | | |||| |||||||||| ||||| ||||||||||| | | | Sbjct 14755 AGAAGTGACAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGAAG 14696 Query 68576 CTGCTTCCCAAATGGGATAAAA 68597 | ||||||||||| || || || Sbjct 14695 CAGCTTCCCAAATTGGGTAGAA 14674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572044617869760