Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq21 547 7e-151 >seq21 Length=95773 Score = 547 bits (606), Expect = 7e-151 Identities = 738/1022 (72%), Gaps = 12/1022 (1%) Strand=Plus/Plus Query 152356 TGGTTTGATGTCCTGGATGACTGGCTTAAGAGA-GACCGTTTCGTTTTTGTTGGTTGGTC 152414 |||||||||| | ||||||||| ||| | | ||||||||||| ||||| |||||||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGG-TTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 40320 Query 152415 TGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTAC 152474 || |||||||||||||| ||| || |||| | || |||||| ||||||| || || Sbjct 40321 AGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAAC 40380 Query 152475 TTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTT 152534 ||| | || |||||||| || ||||| || | ||| || | || || ||||| Sbjct 40381 TTTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 40440 Query 152535 TCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTC-T 152593 | ||||| |||||||| || || ||| | ||||| || || || | |||| | Sbjct 40441 CTTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCA-TTATTATTCTTAT 40499 Query 152594 GGGGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTT 152653 ||||||| || |||||||| ||||| | ||| ||| | || || | ||| | | Sbjct 40500 GGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACAT 40559 Query 152654 TTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGG 152713 |||| || | || || |||| | | |||| || |||||| | || || |||||| | | Sbjct 40560 TTGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTG 40619 Query 152714 CACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCT 152769 ||||| || ||| | ||||| |||||||||||||| || || | |||||| ||| Sbjct 40620 CACGT----TCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCT 40675 Query 152770 GTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCA 152829 ||||||||| || || | || ||||| | || ||||| ||||||| || || || Sbjct 40676 GTTTTTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCT 40735 Query 152830 TCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGG 152889 ||| || || || || |||||||| || || | ||| | ||||| || || |||||| Sbjct 40736 AGTTTTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGG 40795 Query 152890 ACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCT 152949 ||||| || || || ||||||||||||||||| ||| |||| || | || || | | | Sbjct 40796 ACATTAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGT 40855 Query 152950 GCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACT 153009 || ||||| |||| ||| || || || || || | | |||||||||| |||||||| Sbjct 40856 GCTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACA 40915 Query 153010 TTCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGT 153069 ||| || || || ||||||| ||||| || || || ||||| ||||| |||||| Sbjct 40916 TTCCGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGT 40975 Query 153070 TTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATG 153129 |||||||| || || ||||| ||||||| || ||||| |||||||| ||||||||| Sbjct 40976 TTCTGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATG 41035 Query 153130 CTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTC 153189 | || || || || | || || |||| ||| | ||||| | ||||| | ||||| Sbjct 41036 TTATTAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTA 41095 Query 153190 AATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTT 153249 || | |||||||| || || ||||| |||||||| | || | ||||| || || || Sbjct 41096 AACTTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTC 41155 Query 153250 GAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCT 153309 || || |||||||| || ||||| | || || |||||| ||||||||||| |||| || Sbjct 41156 GAAACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCT 41215 Query 153310 GTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCT 153369 |||||||| || || || || ||||||||||| ||||| || || || |||||| Sbjct 41216 CAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCT 41275 Query 153370 CT 153371 || Sbjct 41276 CT 41277 Score = 396 bits (438), Expect = 3e-105 Identities = 368/467 (79%), Gaps = 0/467 (0%) Strand=Plus/Plus Query 151343 GTCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGT 151402 || |||||||| || || |||||||| |||||||| ||||| ||| | ||||| |||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 151403 GTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTT 151462 || || ||||| || | ||||| || ||||||||||| | |||||||| || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 151463 CGTGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 151522 ||||| || || |||||||| || ||| | || ||||| ||||||||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 151523 ACCTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCC 151582 || ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 151583 TTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 151642 |||||||| || ||||| | ||||||||| | || || ||||| ||||| ||||| ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 151643 TTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 151702 |||||||| | ||| | || ||||| |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 151703 TCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCA 151762 || | | ||| || || || | ||||| ||||| ||| | | |||||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 151763 GGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCC 151809 | |||||||||||||||||||| ||||| |||||||||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCC 17840 Score = 187 bits (206), Expect = 3e-42 Identities = 180/229 (79%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 150839 TTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTG 150898 || ||||| ||| | || |||||| | |||||| | || |||||||||| |||||| | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 150899 ATGATTCCAACTCTGTTGGCAGCAAC--CATTTGCTTCATCGTGGCATTCATCGCTGCTC 150956 ||||| || || | || | || || || | |||||| | || ||||||||||||| Sbjct 13143 ATGATCCCTACATTATTAACTGCTACTTCAGTA--TTCATCATCGCTTTCATCGCTGCTC 13200 Query 150957 CCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACA 151016 | || || || |||||||| |||||||| || ||| ||||||| | | ||||| |||| Sbjct 13201 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACA 13260 Query 151017 ACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCA 151065 ||||||||||||||||||| |||||| |||| ||||||||||||||||| Sbjct 13261 ACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 151067 TTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTC 151126 ||||| || || |||||||| || ||| | ||||| ||| | |||||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 151127 CAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAA 151186 ||| | | || | |||||| | | ||||||| |||||||||||||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 151187 CTGTCTTACCGCTTGGGTATGC 151208 | |||||||| || ||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 122 bits (134), Expect = 1e-22 Identities = 110/136 (81%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 151205 ATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTT 151263 |||||||| ||||| ||| || || |||||||| |||||||| ||||| | ||| || || Sbjct 16127 ATGCGTCCTTGGAT-TGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATT 16185 Query 151264 CCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGG 151323 | || |||| ||| |||| ||||||||||||||||| | ||||| | |||||||| || Sbjct 16186 CATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGG 16245 Query 151324 CACATTCAACTACATG 151339 || ||||||| |||| Sbjct 16246 AACTTTCAACTTCATG 16261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549613001456960