Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq21 462 2e-125 >seq21 Length=95773 Score = 462 bits (512), Expect = 2e-125 Identities = 729/1044 (70%), Gaps = 25/1044 (2%) Strand=Plus/Plus Query 73360 ATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 73419 ||||||||| | |||||| |||||| ||| ||||||||||| | || ||||| Sbjct 40261 ATGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 40320 Query 73420 TGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTAC 73479 |||||| | ||||| |||||||| ||| | ||| | ||||||||||| || || || Sbjct 40321 AGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAAC 40380 Query 73480 TTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTT 73539 ||| || || |||||||| |||||||| | || | || || | || || || || Sbjct 40381 TTTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 40440 Query 73540 TTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTC--TATTGTTCCTT 73597 |||||||| ||||| |||||||||| | ||||| || | || |||| ||| | Sbjct 40441 CTTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGG--CACACTCATTATTATTCTTA 40498 Query 73598 TGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAAC 73657 ||||| ||||| || ||||| ||| || || |||| |||||||||||| |||||| Sbjct 40499 TGGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACA 40558 Query 73658 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATT 73717 ||||| || |||||||| ||||| | || || |||||| | | || ||||| ||| Sbjct 40559 TTTGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATT 40618 Query 73718 GCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTA 73777 ||| | || ||||||||||||| || | ||||||||||| ||| || || Sbjct 40619 GCACGTTCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTT 40678 Query 73778 TTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCA 73837 || | || |||| || || |||||||| |||||||||| |||||| Sbjct 40679 TTTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGT 40738 Query 73838 TTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACT 73897 || ||||| || || ||||| |||| |||||| ||| | || ||||| || || || Sbjct 40739 TTTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACA 40798 Query 73898 CTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCC 73957 | || ||||| |||||||||||||| || ||| | | |||| || ||| ||||||| Sbjct 40799 TTAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCT 40858 Query 73958 ATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGT 74017 || || ||||| || || | |||||||| | |||||| || | Sbjct 40859 ATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGA---------------TG--GTG 40901 Query 74018 AAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGT 74077 | | | ||| | || ||| | ||||| | || || || | ||||| ||||| | Sbjct 40902 ATGGTGCAAAC----ACATTCCGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCT 40957 Query 74078 ATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGA 74137 ||| | ||||| ||| | ||||||||||| || |||||| | || || ||||||||| | Sbjct 40958 ATGGTAACTGCGAACCGTTTCTGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGT 41017 Query 74138 TTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGT 74197 | | |||||| ||||||| || || || || | || | |||| || | || ||| Sbjct 41018 TGGCTTCACTTCTTTATGTTATTAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGT 41077 Query 74198 ATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCA 74257 | || ||| |||| || ||| | | || || ||||| ||||| ||||| || | || Sbjct 41078 GTTGTTGGTTTAGCTCTAAACTTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCT 41137 Query 74258 GCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATG 74317 || |||||||||||||| ||||| ||||| ||||| || ||| | | ||||||||||| Sbjct 41138 GCTGAAGACCCAGAGTTCGAAACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATT 41197 Query 74318 AGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTC 74377 | || |||||| | || || ||||| || || || || ||||| |||||||| Sbjct 41198 CGTGCTTGGATGGCTGCTCAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTA 41257 Query 74378 TTGCCACGAGGCAACGCACTATAA 74401 || || || || ||||| |||||| Sbjct 41258 TTACCTCGTGGTAACGCTCTATAA 41281 Score = 367 bits (406), Expect = 1e-96 Identities = 373/486 (77%), Gaps = 0/486 (0%) Strand=Plus/Plus Query 72737 TCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAG 72796 |||| |||||||| ||||| ||||| || |||||||| ||||| ||| ||||||||| | Sbjct 17372 TCGTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTG 17431 Query 72797 GTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAA 72856 || | || |||||| | ||| ||| |||||||||||| | |||||||||||| ||| Sbjct 17432 GTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAA 17491 Query 72857 TCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAG 72916 || | || ||||| || ||||| | ||| | || || || ||||| |||||||||| Sbjct 17492 TCCGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 17551 Query 72917 AAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCAT 72976 |||| || ||||| || || || || || ||||| ||| | ||||||||||| || || | Sbjct 17552 AAACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTT 17611 Query 72977 CATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTAT 73036 | |||||||||||||||||||||||||||||| | |||| | || || || || | | Sbjct 17612 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTT 17671 Query 73037 GGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACC 73096 |||| || | | ||||| | || ||||| |||||||||||||| ||||||||||||| Sbjct 17672 GGTTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACC 17731 Query 73097 AATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAG 73156 |||||||||| ||| || | || || || ||||||| || | | ||| | | Sbjct 17732 AATCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTG 17791 Query 73157 CAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAG 73216 | ||| | || |||||||||||||| ||| | || || |||||||||||| ||||| ||| Sbjct 17792 CTAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAG 17851 Query 73217 CATCTG 73222 |||||| Sbjct 17852 CATCTG 17857 Score = 183 bits (202), Expect = 3e-41 Identities = 173/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||||||||| | || || ||||| || || | ||| | |||||||||||||| | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| | |||||||| || | ||||| | || ||||||||||||||| Sbjct 13143 ATGATCCCTACATTATTAACTGCTACTTCAGTATTCATCATCGCTTTCATCGCTGCTCCT 13202 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 ||||| |||||||| || ||| | || |||||| | ||||| || ||||| || |||||| Sbjct 13203 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAAC 13262 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGG 72455 ||||||||||||||||||||||| |||||||||| || || Sbjct 13263 ATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGG 13303 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 72601 ATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTC 72660 ||| | |||||||| |||||| ||||| ||||| || | || || ||| |||||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 72661 CTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGT 72720 | | || || |||| || ||||| |||||||| |||||||| ||||||| ||||| Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 72721 ACGTTCAACTTCATG 72735 || |||||||||||| Sbjct 16247 ACTTTCAACTTCATG 16261 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 72463 TTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTAC 72522 ||||| || || |||||||| || || | || |||||||| || ||||| ||||||||| Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 72523 CAGTTAGTTATTTTCCACTTCCTTATTGGAATCT-CTGCCTACATGGGTAGACAGTGGGA 72581 || ||| | ||| |||||| | | || |||| ||| ||||||||| | ||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTG-TTACATGGGTCGTGAGTGGGA 14792 Query 72582 ACTATCATACAGACTAGGAATG 72603 | |||| ||| | |||| ||| Sbjct 14793 ATTATCTTACCGTTTAGGTATG 14814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572863803861440