Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1064 95.1 1e-14 seq415 82.4 7e-11 >seq1064 Length=71438 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || |||||||| || || || |||||||||| || || |||||||||||| | | Sbjct 28358 AGGCATCCCTCCCGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCG 28417 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | || | || || ||||| || ||||| || || |||||| ||||| |||| |||| Sbjct 28418 CACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTACACCTGGTGCTGCGCCTGCG 28477 Query 24925 CGGAGGC 24931 ||| ||| Sbjct 28478 CGGTGGC 28484 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || ||||| || || || || |||||||||| || || |||||||||||| | Sbjct 27827 AGGCATCCCTCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCG 27886 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | || | ||||| ||||| || ||||| || || || ||| ||||| |||| |||| Sbjct 27887 CACCCTGGCTGATTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCG 27946 Query 24925 CGGAGGC 24931 ||| ||| Sbjct 27947 CGGTGGC 27953 >seq415 Length=64367 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || ||||| || || || || ||||||||||||| || ||||||||||| | Sbjct 63839 AGGCATCCCTCCTGACCAGCAGCGCCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGCCG 63780 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | || | || || ||||| || ||||| || || || ||| ||||| |||| |||| Sbjct 63779 CACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCG 63720 Query 24925 CGGAGGCGGAACTGAGC 24941 ||| ||| | |||||| Sbjct 63719 CGGCGGCTG--CTGAGC 63705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449889906751040