Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq21 506 2e-138 >seq21 Length=95773 Score = 506 bits (560), Expect = 2e-138 Identities = 705/985 (72%), Gaps = 10/985 (1%) Strand=Plus/Plus Query 158805 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTACCCACTGCTTATCTTGCT 158864 || |||||||| ||||| || ||||| || ||||||||| | || ||| || |||| Sbjct 40295 GACCGTTTCGTATTTGTAGGTTGGTCAGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCA 40354 Query 158865 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACACATGGACTCGCT 158924 | || |||||| ||||||| || ||||| | || |||||||||||||| | ||| Sbjct 40355 CTAGGAGGTTGGTTTACTGGTACAACTTTTGTAACATCATGGTATACACATGGGTTAGCT 40414 Query 158925 ACTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCT 158984 ||||| || | || ||| ||||| | || || |||||||| || || || | | Sbjct 40415 ACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTTTCAACACCTGCAAACAGT 40474 Query 158985 ATGGGTCATTCTCTTCTGCTTCTC-TGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 159043 |||| || || || | |||| |||||||| || |||||||| ||||| | || Sbjct 40475 ATGGCACACTCA-TTATTATTCTTATGGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTG 40533 Query 159044 GGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGG 159103 | ||| | || || | |||| ||||| || | || ||| | |||| ||||||| Sbjct 40534 GTGTCAATTAGGTGGTTTATGGACATTTGTTGCTTTACATGGTTCTTTTGGTTTAATTGG 40593 Query 159104 TTTCATGCTTCGCCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCCTACAATG 159159 |||||| | || || |||||| | |||||| || ||| | ||||| ||||||| Sbjct 40594 ATTCATGTTACGTCAATTTGAAATTGCACGT----TCAGTAAACTTACGTCCTTACAATG 40649 Query 159160 CTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTG 159219 ||||||| || || | |||||||||||||||||| || ||| | || |||||| | | Sbjct 40650 CTATTGCTTTTTCAGCTCCTATTGCTGTTTTTGTTTCAGTATTCTTAATTTACCCATTAG 40709 Query 159220 GTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTAC 159279 | || || ||||||| || || || ||||| || || || || ||| | || | Sbjct 40710 GACAATCAGGTTGGTTCTTTGCACCTAGTTTTGGTGTTGCTGCTATCTTCCGTTTTATTT 40769 Query 159280 TCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTG 159339 | ||| | ||||| || || || |||||| ||||||| |||||||||||||| ||||||| Sbjct 40770 TGTTCTTCCAAGGTTTTCATAACTGGACATTAAACCCATTCCATATGATGGGTGTTGCTG 40829 Query 159340 GTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTAT 159399 || | |||||| || | ||| ||||||||| || | || |||||||| ||||||| Sbjct 40830 GTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTTGAAAACACATTAT 40889 Query 159400 ACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGA 159459 || ||||| || |||||||| || || ||| | ||||||||| || || | Sbjct 40890 TTGAAGATGGTGATGGTGCAAACACATTCCGTGCATTTAACCCAACTCAAGCTGAAGAAA 40949 Query 159460 CTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTA 159519 |||| |||||||| ||||| ||||| |||||||| || || || || |||| || || | Sbjct 40950 CTTACTCTATGGTAACTGCGAACCGTTTCTGGTCACAAATTTTTGGTGTTGCTTTCTCAA 41009 Query 159520 ACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCA 159579 |||| || |||||||| ||||||||||| || || || || | || ||||||| || Sbjct 41010 ACAAACGTTGGCTTCACTTCTTTATGTTATTAGTTCCGGTAACAGGACTATGGATGTCTG 41069 Query 159580 GTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGA 159639 ||||| || ||||| | ||||| || | |||||||| || ||||| ||||| | Sbjct 41070 CGATTGGTGTTGTTGGTTTAGCTCTAAACTTACGTGCTTATGACTTCGTATCACAAGAAA 41129 Query 159640 TCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATG 159699 | | || || ||||| ||||| || ||||| ||||| || || || ||| | | |||| Sbjct 41130 TTCGTGCTGCTGAAGACCCAGAGTTCGAAACTTTCTATACTAAAAATATTTTATTAAATG 41189 Query 159700 AAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAG 159759 |||| | ||||||||| |||| || || ||||| || ||| || | ||||| | Sbjct 41190 AAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACGAACGTTTAGTATTCCCTG 41249 Query 159760 AAGAAGTTCTACCAAGAGGTAACGC 159784 ||||||| |||| | |||||||| Sbjct 41250 AAGAAGTATTACCTCGTGGTAACGC 41274 Score = 376 bits (416), Expect = 3e-99 Identities = 378/491 (77%), Gaps = 0/491 (0%) Strand=Plus/Plus Query 157553 TCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTG 157612 |||| ||||| || || || || ||||||||||| || ||||||||| | || || |||| Sbjct 17372 TCGTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTG 17431 Query 157613 GGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTG 157672 | ||||| ||||| || || ||||||||||||||||| | |||||||| || | Sbjct 17432 GTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAA 17491 Query 157673 TTCGTGAAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG 157732 | |||||||||||||||| || || ||| | || ||||| |||||||||||||||| Sbjct 17492 TCCGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 17551 Query 157733 AGACGTACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTT 157792 | || ||||||||||| || |||||||||||||| ||||| | |||||||||||||||| Sbjct 17552 AAACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTT 17611 Query 157793 CATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCT 157852 | ||||||||| | | ||||||||| | || || ||||| ||||| || || | Sbjct 17612 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTT 17671 Query 157853 GGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACC 157912 |||||||||| | || | || ||||| |||||||| ||||||||||||||||||| Sbjct 17672 GGTTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACC 17731 Query 157913 AGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCG 157972 | || | ||||| || |||||||| || ||||| ||||| || || | ||||| | Sbjct 17732 AATCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTG 17791 Query 157973 CTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTG 158032 || | ||||||||||||||||| || |||||||| |||||||||||| | || | | Sbjct 17792 CTAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAG 17851 Query 158033 CTGCTGCAGAA 158043 | ||| |||| Sbjct 17852 CATCTGTAGAA 17862 Score = 165 bits (182), Expect = 9e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 ||||| |||||| | ||||| || | |||||||| || | |||||||| |||||| | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || ||||| | | || ||| || | ||||| | || ||| | || || || Sbjct 13143 ATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCATCGCTGCTCC 13201 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 ||| || |||||||| ||||| || || |||||| ||||||| | | || || ||||| Sbjct 13202 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 13261 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCA 157277 ||||||||||||||| || |||||| |||||||||| |||||||| || Sbjct 13262 CATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 122 bits (134), Expect = 9e-23 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 157279 TTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTC 157338 |||||||| || |||||||| || || | ||||||||| | |||||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 157339 CAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAA 157398 ||| | | || | ||||||| | | || |||| || ||||| |||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 157399 CTTTCTTACCGTTTAGGTATGC 157420 | ||||||||||||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 114 bits (126), Expect = 1e-20 Identities = 108/137 (79%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469 ||||| ||||| || ||||| ||| || ||||| |||||||| || ||||| | ||| Sbjct 16122 TTTAG--ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 16179 Query 157470 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 157529 |||||| || |||| ||| |||| |||||||||||||| || | ||||||| | ||||| Sbjct 16180 TGTATTCATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 16239 Query 157530 CTCTGGTACTTTTAACT 157546 || || ||||| |||| Sbjct 16240 TTCAGGAACTTTCAACT 16256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545264275821440