Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq21 531 6e-146 >seq21 Length=95773 Score = 531 bits (588), Expect = 6e-146 Identities = 736/1027 (72%), Gaps = 10/1027 (1%) Strand=Plus/Plus Query 178936 TGGTTCGATGTCTTGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCT 178995 ||||| |||| | ||||||||| | || || || || || ||||| |||||||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 40321 Query 178996 GGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCT 179055 || || || ||| |||| ||| || |||| | || |||||| ||||||| ||| || Sbjct 40322 GGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAACT 40381 Query 179056 TTTGTTACGAGTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTT 179115 ||||| || ||||| || ||||| | |||| ||| || | |||||| |||||| Sbjct 40382 TTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 40441 Query 179116 CTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TG 179174 | || || || || || || ||||| | ||||| || || || || | ||| || Sbjct 40442 TTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCA-TTATTATTCTTATG 40500 Query 179175 GGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTT 179234 |||||| || |||| || |||| || ||||| ||| | || || |||||| || Sbjct 40501 GGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACATT 40560 Query 179235 CGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGC 179294 || ||| | || ||| | || | |||||||||||||| | ||||| |||||| | || Sbjct 40561 TGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTGC 40620 Query 179295 ACGTCTCATCGGTA----TCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCG 179350 |||| || ||| | |||||||||||||| ||||||||| | | ||||||||| | Sbjct 40621 ACGT----TCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTG 40676 Query 179351 TATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCAT 179410 | || ||| ||||| | || |||||| | |||||||| ||||||||||||| || Sbjct 40677 TTTTTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTA 40736 Query 179411 CGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGA 179470 ||||||||||| || ||||| | || | | ||||| |||||||| || ||||||| Sbjct 40737 GTTTTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGA 40796 Query 179471 CACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTG 179530 || | ||||| || || |||||||| ||||| ||| | | |||| |||| | | | || Sbjct 40797 CATTAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 40856 Query 179531 CTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACAT 179590 ||||||| || | ||||| || || ||||| | ||||||||| || |||||||||| Sbjct 40857 CTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACAT 40916 Query 179591 TTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTT 179650 | || || || | || |||| || || || || |||||||| || |||||||||| Sbjct 40917 TCCGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTT 40976 Query 179651 TTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGC 179710 | ||||| || || || || ||| | || || || |||||| | |||||||||| | Sbjct 40977 TCTGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGT 41036 Query 179711 TGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTA 179770 | || ||||| || | || || ||| | ||| | ||||| | |||| ||||||| | Sbjct 41037 TATTAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAA 41096 Query 179771 ATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCG 179830 | | ||||||||||| || || ||||| || | || || ||||| || ||||||| Sbjct 41097 ACTTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCG 41156 Query 179831 AGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTG 179890 | || |||||||| || || ||| | | |||||||| | ||||||||| |||| || Sbjct 41157 AAACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTC 41216 Query 179891 CTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCAC 179950 || |||||||| ||| || | ||||| |||||||| ||||| |||||||||| | Sbjct 41217 AAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTC 41276 Query 179951 TGTGATT 179957 | | ||| Sbjct 41277 TATAATT 41283 Score = 349 bits (386), Expect = 4e-91 Identities = 359/468 (77%), Gaps = 1/468 (0%) Strand=Plus/Plus Query 178062 GTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGG 178121 || |||||||| ||||| || || ||||||||||| ||||||||| | ||||| ||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 178122 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTC 178181 ||||| ||||| || | |||||||||||||| || | |||||||| || | || Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 178182 CGTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAA 178241 ||||| || || |||| || || ||| | || ||||| ||||| |||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 178242 ACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCG 178301 || || |||||||| || || || |||||||| |||||||| ||||||||||| || || Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 178302 TTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGG 178361 ||||||||||| |||||| | ||||||||| | || || ||||| || || || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 178362 TTCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAG 178421 ||||| || | ||| | || || ||||| || ||||| || || |||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 178422 TCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCC 178481 || | | || |||||| ||||| | ||||||||||| ||| | |||||||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 178482 GGTCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCC 178529 | || |||||||| ||||||||| | || || || |||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAA-CGCTCACAACTTCCC 17840 Score = 147 bits (162), Expect = 3e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 ||||| |||||| | |||||||| | ||||| | || |||||||||| || || | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | || | || ||| || | |||||| |||| ||| |||||||||| Sbjct 13143 ATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCATCGCTGCTCC 13201 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || ||||| || |||||||| || || |||||||| | | || || ||||| Sbjct 13202 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 13261 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCA 177784 ||||||||||||||| || || || |||| ||||| || ||||| || Sbjct 13262 CATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 177786 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 177845 ||||| || || |||||||| || || | ||||||||| | || ||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 177846 CAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAA 177905 ||| | | || | ||||||| | | || |||| || ||||| |||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 177906 CTTTCATACCGTCTAGGTATGC 177927 | || |||||| ||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 177924 ATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTT 177983 ||||| || ||||| ||| || ||||||||||| |||||||| || | || || || Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 177984 CTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGT 178043 | |||| ||| |||| |||||||| ||||| || | ||||||| | ||||| || || Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 178044 ACTTTTAACTACATG 178058 ||||| |||| |||| Sbjct 16247 ACTTTCAACTTCATG 16261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605656843090880