Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq1022 82.4 7e-11 seq21 82.4 7e-11 >seq1022 Length=134933 Score = 82.4 bits (90), Expect = 7e-11 Identities = 58/64 (91%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 149999 ATTAGCTCAGTTGGT-AGAGCGCTCGACCGATAATCGAGAGGT-CACTGGTTCAAGTCCA 150056 ||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||| Sbjct 132398 ATTAGCTCAGTTGGTTAGAGCGCTCGCTTGATAAGCGAGAGGTTCACTGGTTCAAGTCCA 132457 Query 150057 GTAT 150060 |||| Sbjct 132458 GTAT 132461 >seq21 Length=95773 Score = 82.4 bits (90), Expect = 7e-11 Identities = 58/64 (91%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 149999 ATTAGCTCAGTTGGT-AGAGCGCTCGACCGATAATCGAGAGGT-CACTGGTTCAAGTCCA 150056 ||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||| Sbjct 6579 ATTAGCTCAGTTGGTTAGAGCGCTCGCTTGATAAGCGAGAGGTTCACTGGTTCAAGTCCA 6520 Query 150057 GTAT 150060 |||| Sbjct 6519 GTAT 6516 Score = 82.4 bits (90), Expect = 7e-11 Identities = 58/64 (91%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 149999 ATTAGCTCAGTTGGT-AGAGCGCTCGACCGATAATCGAGAGGT-CACTGGTTCAAGTCCA 150056 ||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||| Sbjct 89274 ATTAGCTCAGTTGGTTAGAGCGCTCGCTTGATAAGCGAGAGGTTCACTGGTTCAAGTCCA 89333 Query 150057 GTAT 150060 |||| Sbjct 89334 GTAT 89337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486020488907520