Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq723 143 3e-29 seq787 118 1e-21 seq1064 86.0 6e-12 seq654 84.2 2e-11 >seq723 Length=331235 Score = 143 bits (158), Expect = 3e-29 Identities = 205/289 (71%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 148460 CCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGG 148519 ||||||||| | |||||| ||||||||||| | ||| ||||||||||| ||||| Sbjct 247993 CCACATGTCCTGCTGCAGGATGCCGCGGCTGACCGGGGAGCCCTCGTACGTCTCGTACGT 247934 Query 148520 TCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGC 148579 || | | || ||||| |||||| | ||| ||||| ||||||| || ||||| Sbjct 247933 GCCCTCCACCTTGGCCAGCCTGCAGCTGGTCTCCAGCGCTGCGTAGTAGATGGTCTCAAA 247874 Query 148580 AATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAA 148639 || | | |||| ||| || | || ||||| || | ||||| | ||| ||| || Sbjct 247873 GATGTCCTTGTTCAGCTGCACTGCATCGTCGCTGTCAAAGGGCATGCCGAGCAGCAGGAA 247814 Query 148640 CGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCG 148699 | ||| || |||||||| ||||||| ||| ||||||| ||| ||||||||| |||| Sbjct 247813 GGTGTCAGCCAGGCCCTGCACGCCCAGGCCGATGGGCCTGTGGCGCATGTTGGAGCGGCG 247754 Query 148700 CGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTG 148748 || ||| || ||| |||| |||||||||||||| || ||| Sbjct 247753 GGCCGACTCCGTGGGGTAGAAGTTGACGTCGATGATCTTGTTCAGGTTG 247705 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/184 (72%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 120645 CGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCC 120704 ||||||||| |||||||||||||| || | || |||||||| || || ||||| Sbjct 27117 CGCAAAGTCAGTGTGCAGGCCCTCATCCCTGCTGATGAGCTCGTTAGAGAAGGTGAGGCC 27176 Query 120705 GGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACAC 120764 ||||| | ||| | |||||| |||| |||||| |||||||| || ||| | Sbjct 27177 CGGCATAAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGTGGAT 27236 Query 120765 GCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGAT 120824 |||||||||| ||||||||| | || ||||| | ||| | || | ||||| |||| Sbjct 27237 GCCCTCCACGCAGGCAAAGGCCAGCAGGCGCT-GCGCAAAGCTGC--TGCTGCTGCCGAT 27293 Query 120825 CCAC 120828 |||| Sbjct 27294 CCAC 27297 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 148250 CAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCT 148309 ||| | ||| || ||||| ||||||||| |||||||| |||| || | |||||| Sbjct 248304 CAGGTGCTGGTTGACCACGGTGAACTCGCCGCTCAGCACGCGGCGCACGTAGATGTTGCT 248245 Query 148310 CGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCAT 148369 || | || || || ||||||||||||||| ||||| ||| |||| |||||||| Sbjct 248244 GGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTTGCGGTGGGCAT 248185 Query 148370 GTACGCTACCAGCAGCGAGTTGCGCA 148395 | ||| |||||||| |||||||| Sbjct 248184 GGGCGCCACCAGCAGGCTGTTGCGCA 248159 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 149302 CCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGG 149361 ||||||| |||| |||| | ||| ||| ||||| || | ||| || ||||||| || Sbjct 246086 CCTGGTCCACGTAGCGCGCGGTGTCGTTGAACACGCGCAGCATGGGCACAATGCCGTTGC 246027 Query 149362 CAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGC 149421 |||||||| || || ||| ||||| || || | ||||| | | ||| || Sbjct 246026 TGGTGCCGTTGGTGCCGCGGATGTAGCTGCCCGTGGCGCGGATGTTGTGGATGCTGATGC 245967 Query 149422 CGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCT 149481 |||| || ||| | |||| |||| | ||||| || ||| | ||||||||||| Sbjct 245966 CGATACCTCCGGCAGACTTGCTGATGACAGCGCACTCCTTGAGGGAGTCGTAGATGCCCT 245907 Query 149482 CGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCA 149515 ||||||||||| ||| || ||||| ||||| Sbjct 245906 CGATGCTGTCGTTCTTGCTGCACAGCAAGAAGCA 245873 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/132 (76%), Gaps = 5/132 (4%) Strand=Plus/Minus Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAG-TCG 148105 || || ||||||||||||||||| ||||||| | |||||| ||||| || | || || Sbjct 248812 TTGAAGGACTGGCTCTGGTCAATATACGCGCCCCTGTCAGCCGCCATGTCCACCAGCACG 248753 Query 148106 CTTTATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTC 148165 | | ||| ||||||||| |||||||||||||| ||||| || ||| || ||| Sbjct 248752 CGCT-GCTTAATCTCCCAGACCGTCTTGTACAGCGCCTTGAGGTGCATGGGGAT---GTC 248697 Query 148166 GATGCGCTGCAC 148177 || || |||||| Sbjct 248696 GAGGCCCTGCAC 248685 Score = 82.4 bits (90), Expect = 7e-11 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 149144 CACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGC-CTTGC 149202 |||||||| ||| ||||| ||| | ||| || |||| | |||||||| || | || Sbjct 246438 CACGCGCTGCATGAACAGGTCGTTGATCCACAGGCCGTAGAACAGGTCGCGGGCGCGCGC 246379 Query 149203 AGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAA-TATGTCCGCGTGCCAC 149261 || || ||| ||| ||||| || ||| | || || |||||| ||||||||| Sbjct 246378 C-TCCTCCTTGCCGTGGTTCTTGCGCATGTCCAGC-CACTCAAATATGTCGGCGTGCCAC 246321 Query 149262 GGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTGCCGCC 149302 ||||| | ||| | |||| ||||||||||||||||||||| Sbjct 246320 GGCTCCAGGTAGATGGCGAACGCGCCCTTGCGCTTGCCGCC 246280 >seq787 Length=122967 Score = 118 bits (130), Expect = 1e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| | ||||| |||||||||||||| ||||| || ||||||||| || || Sbjct 88046 CAGGCAGCCGAAGTCTGTGTGCAGGCCCTCATCGCGGCTGATGAGCTCGTTGGAGAAGGT 88105 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 || |||||||||| ||| | |||||| |||| |||||| |||||||| || || Sbjct 88106 GAGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCTGAGAA 88165 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAA 120803 ||| | |||||||||| ||| |||| |||| |||||| || || Sbjct 88166 GAAGATGCCCTCCACGGCGGCGTAGGCCACCAGGCGCTCCGCAAA 88210 >seq1064 Length=71438 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGC 133517 |||| |||||||| ||||| || ||||| || ||| ||| | ||||| |||||| Sbjct 28459 TGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGCCCATCCTCCAGCTGC 28400 Query 133518 TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 ||||| || | || || |||||||||||||||||||||||| Sbjct 28399 TTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCT 28358 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || |||||||| ||| ||| | | | ||||| ||||||||||| Sbjct 27922 GTGGACTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGGCCA-TCCTCCAGCTGCTTGCC 27864 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 || | || || ||||||||||| |||||||||||| Sbjct 27863 AGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCT 27827 >seq654 Length=867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| ||| ||| |||||| ||||||||||| Sbjct 470 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 411 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 || | || || ||||||||||| |||||||||||| Sbjct 410 GCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCT 375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483412533504320