Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq21 394 3e-105 >seq21 Length=95773 Score = 394 bits (436), Expect = 3e-105 Identities = 374/475 (79%), Gaps = 2/475 (0%) Strand=Plus/Plus Query 20009 GTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGT 20068 || |||||||| |||||||||||||| |||||||| ||||||||| | ||||| |||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 20069 GTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTG 20128 ||||| ||||| ||| ||||| ||| ||||||||||| | ||||| || || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 20129 CGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAG 20188 ||||| || |||||| | ||| | ||| | || ||||| || || ||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 20189 ACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCT 20248 || || |||||||||||||| || ||||||||||| ||||| |||||||||||||||||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 20249 TTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGG 20308 |||||||| ||||| ||||||||||| | ||||| ||||| || ||||| |||||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 20309 TTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAG 20368 ||| |||| || || |||| || ||||| || || || |||||||||||||| ||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 20369 TCCCTTCTCGA-CAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGC 20427 || || | || |||| |||||||| | | || ||||||||||| |||| ||||| Sbjct 17734 TCAGTTGTTGATTCACAA-GGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGC 17792 Query 20428 TAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 ||| | || | || || ||||| ||||| || ||||| ||||||||| | ||| Sbjct 17793 TAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGAC 17847 Score = 87.8 bits (96), Expect = 5e-13 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 19733 TTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTC 19792 ||||||||||||||||||||| ||| | ||||| ||| | |||||||| || || | | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 19793 CAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAA 19852 ||| | | || | |||||| || | || |||| ||||||||| || ||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 19853 CTTAGC-TATCGACTAGGAATG 19873 ||| | || || |||| ||| Sbjct 14794 -TTATCTTACCGTTTAGGTATG 14814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148826382276144