Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq21 361 2e-95 >seq21 Length=95773 Score = 361 bits (400), Expect = 2e-95 Identities = 363/469 (77%), Gaps = 2/469 (0%) Strand=Plus/Plus Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || |||||||| |||||||||||||| |||||||| ||||||||| | || || ||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTG 29256 || || ||||| || |||| ||| ||||||||||| | || || || || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 29257 CGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAG 29316 ||||| || |||||| || ||| ||| | || ||||| || || ||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 29317 ACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCT 29376 ||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| |||||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 29377 TTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGG 29436 ||||| || ||||| ||||||||||| | ||||| ||||| || ||||| |||||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 29437 TTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAG 29496 ||| |||| || || |||| || ||||| || || || |||||||| ||||| ||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 29497 TCGCTTCTCGA-CAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || || | || |||| |||||||| | || || |||||||| | |||| || || Sbjct 17734 TCAGTTGTTGATTCACAA-GGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGC 17792 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCA 29604 |||| | || | ||||| ||||| || ||||| ||||| ||||||||| Sbjct 17793 TAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCA 17841 Score = 104 bits (114), Expect = 7e-18 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 28999 ATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTC 29058 ||| | || |||||| ||| || ||||| || || || ||||| || |||| || ||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 29059 CTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGC 29118 || ||||||| |||| ||||||||||| |||| |||||||| ||||||||||| Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 29119 ACCTTCAACTACATG 29133 || ||||||| |||| Sbjct 16247 ACTTTCAACTTCATG 16261 Score = 82.4 bits (90), Expect = 2e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 28861 TTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTC 28920 ||||||||||||||||||||| ||| | ||||| ||| | |||||||| || || | | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 28921 CAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAA 28980 ||| | | || | |||||| || | || ||| ||||||||| || ||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 28981 CTTAGC-TATCGACTAGGAATG 29001 ||| | || || |||| ||| Sbjct 14794 -TTATCTTACCGTTTAGGTATG 14814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146663217417328