Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq21 322 1e-83 >seq21 Length=95773 Score = 322 bits (356), Expect = 1e-83 Identities = 361/480 (75%), Gaps = 2/480 (0%) Strand=Plus/Plus Query 19228 GTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGT 19287 || ||||| |||||||||||||| || |||||||| ||||||||| | ||||| |||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 19288 GTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTG 19347 || || || || ||| |||| ||| ||||||||||| | ||||| || || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 19348 CGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAG 19407 |||||||| |||||| | | |||| ||| | || ||||| || || ||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 19408 ACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCC 19467 ||||| ||||| || || || || || || |||||||| | || ||||| ||||| || Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 19468 TTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGG 19527 |||||||| ||||| |||| ||||| || ||||||||||| || || || |||||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 19528 TTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAG 19587 || | || | || | || ||||| |||||| | || || || ||||| ||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 19588 TCCCTTCTTGA-CAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGC 19646 || || |||| |||| |||||||| | | || ||||||||||| |||| ||||| Sbjct 17734 TCAGTTGTTGATTCACAA-GGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGC 17792 Query 19647 TAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGC 19706 |||| | || | || || |||||||||||||| ||||| ||||||||| | || || || Sbjct 17793 TAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAGC 17852 Score = 91.5 bits (100), Expect = 4e-14 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACT 18782 ||| ||||| ||| | || ||| || |||||| | || ||||| |||||||| | Sbjct 13082 TTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGAT 13141 Query 18783 GATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | | | |||||| | || ||||| || || ||||| ||||| | Sbjct 13142 CATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCATCGCTGCTC 13200 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTAT--GGAAA 18899 |||| ||||| || ||||| ||||| ||||| ||| | || || | |||| ||||| Sbjct 13201 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGT--TCATTATTATACGGAAA 13258 Query 18900 CAACATCATATCGGGAGCCGTCGTTCC 18926 ||||||||| || || || || ||||| Sbjct 13259 CAACATCATCTCTGGTGCTGTAGTTCC 13285 Score = 84.2 bits (92), Expect = 6e-12 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 18952 TTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTC 19011 ||||||||||||||||||||| ||| | ||||| ||| | |||||||| || || | | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 19012 CAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAA 19071 ||| | | || | |||||| || | || ||| ||||||||| || ||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 19072 CTTAGC-TATCGACTAGGGATGC 19093 ||| | || || |||| |||| Sbjct 14794 -TTATCTTACCGTTTAGGTATGC 14815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141146507037744