Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq78 100 3e-16 seq1064 98.7 1e-15 seq654 98.7 1e-15 seq415 89.7 5e-13 seq723 82.4 8e-11 >seq78 Length=354265 Score = 100 bits (110), Expect = 3e-16 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 134493 CTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGT 134551 ||||| |||| ||||||||| ||||| || ||||||||||||||||| || ||||| ||| Sbjct 344595 CTGAGGCGCAGCACGAGGTGCAGCGTTGACTCCTTTTGAATGTTGTAATCAGCCAA-GGT 344537 Query 134552 GTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCC 134611 | | || || ||||| ||||||||||| || | |||||||| || || || || || Sbjct 344536 GCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATACC 344477 Query 134612 TTCTTTTTCTTG 134623 || || || || Sbjct 344476 CTCCTTGTCCTG 344465 >seq1064 Length=71438 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| |||||||||||||| ||||| || ||||||||||| | | |||| | Sbjct 28474 AGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGC 28415 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 || || ||||| ||||| ||||| |||| |||||||| ||||| || |||||| Sbjct 28414 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCT 28358 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| |||||||||||||| ||||| || ||||||||||| | | |||| | Sbjct 26298 AGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 26239 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 || || ||||| ||||| ||||| |||| |||||||| || || || |||||| Sbjct 26238 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCT 26182 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| |||||||||||||| ||||| || ||||||||||| | | |||| | Sbjct 26853 AGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 26794 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 || || ||||| ||||| ||||| |||| |||||||| || || || |||||| Sbjct 26793 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCT 26737 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||||| ||||| || ||||||||||| | | |||| | Sbjct 27411 AGGCGCAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 27352 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 || || ||||| ||||| ||||| |||| |||||||| || || || |||||| Sbjct 27351 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCT 27295 >seq654 Length=867 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||||| ||||| || |||||||||||| | | |||| | Sbjct 491 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 432 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| ||||| |||| |||||||| || || || |||||| Sbjct 431 CCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCT 375 >seq415 Length=64367 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||||| ||||| || ||||||||||| | | |||| | Sbjct 63723 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 63782 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| || || ||||| |||| |||||||| || || || |||||| Sbjct 63783 CCGTCCTCCAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCT 63839 >seq723 Length=331235 Score = 82.4 bits (90), Expect = 8e-11 Identities = 123/173 (71%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 9040 GTGGAAGCCAACGGCAGCGTTCAGAACATTGACGCGGTGCCTCAACACATTAAAGAGCTG 9099 |||| ||||||||||||||| ||| | | ||| | || ||| | || | |||| Sbjct 248667 GTGGCAGCCAACGGCAGCGTGCAGGGCCTCGAC---ATCCCCATGCACCTCAAGGCGCTG 248723 Query 9100 TATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATCGGCATGGCTGCGGATAGAGGC 9159 || || || || ||||| || ||||| || |||| | | |||||| || || || ||| Sbjct 248724 TACAAGACGGTCTGGGAGATTAAGCAGCGCGTGCTGGTGGACATGGCGGCTGACAGGGGC 248783 Query 9160 GCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGT-AGCCGCACCAACTT 9211 || | |||||| ||||| || || || |||||| | | ||| | ||||||| Sbjct 248784 GCGTATATTGACCAGAGCCAGTCCTTCAACGTGCACATGAGCGACCCCAACTT 248836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505389757687360