Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq21 603 1e-167 >seq21 Length=95773 Score = 603 bits (668), Expect = 1e-167 Identities = 749/1023 (73%), Gaps = 2/1023 (0%) Strand=Plus/Plus Query 159376 TGGTTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 159435 |||||||||| | ||||||||| | | ||| || || || ||||| |||||||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 40321 Query 159436 GGACTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACT 159495 || || || ||| |||| ||| || | || | || |||||| ||||||| || ||| Sbjct 40322 GGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAACT 40381 Query 159496 TTTATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTT 159555 ||| | || ||||| || || || | |||| ||| ||| | |||||| ||| || Sbjct 40382 TTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 40441 Query 159556 CTCACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TG 159614 | || || || || ||||| ||||| | ||||| || || || || | ||| || Sbjct 40442 TTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCA-TTATTATTCTTATG 40500 Query 159615 GGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTT 159674 |||||| || ||||||| || || || ||||| ||| | || || | ||| | || Sbjct 40501 GGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACATT 40560 Query 159675 TGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGC 159734 ||||||| | || ||| | || | | | || || || ||| |||| |||||||||||||| Sbjct 40561 TGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTGC 40620 Query 159735 TCGTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTT 159794 ||| ||| | |||||||||||||||||||| || || | ||||||||||||||| Sbjct 40621 ACGTTCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTTTT 40680 Query 159795 TGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTT 159854 ||| |||||| | || || ||| | || || || |||||||||||||||||||| Sbjct 40681 TGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGTTT 40740 Query 159855 CGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCT 159914 || || || || ||||| | || | |||||| | || ||||| || |||||||| | Sbjct 40741 TGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACATT 40800 Query 159915 CAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAAT 159974 ||||| |||||||||||||| ||||||||| | |||||| || | || ||||| || Sbjct 40801 AAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTAT 40860 Query 159975 CCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAA 160034 || ||||||||||| || |||||||| ||||||||||| || ||||||||||| Sbjct 40861 TCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACATTCCG 40920 Query 160035 GGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 160094 || ||| | || ||||||| ||||| ||||| |||||||| ||||| ||||| ||||| Sbjct 40921 TGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTTTCTG 40980 Query 160095 GTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 160154 ||| || || || |||||||| || || ||||| || |||||||| || || ||||| || Sbjct 40981 GTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGTTATT 41040 Query 160155 TGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCT 160214 || || || | || ||||||| || | ||||| || ||||| | ||| | ||| | Sbjct 41041 AGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAAACTT 41100 Query 160215 TCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGAC 160274 |||||||| || ||||| || || ||| | || || ||||| || || || || || Sbjct 41101 ACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCGAAAC 41160 Query 160275 CTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGA 160334 ||||| || || || || |||| |||||||| |||||||||||||||| || || Sbjct 41161 TTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 41220 Query 160335 TCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACTGTG 160394 |||||||| ||| || | |||||||| |||||| ||||| | |||||||| || | Sbjct 41221 CCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCTATA 41280 Query 160395 ATT 160397 ||| Sbjct 41281 ATT 41283 Score = 403 bits (446), Expect = 2e-107 Identities = 370/468 (79%), Gaps = 0/468 (0%) Strand=Plus/Plus Query 158180 GTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGG 158239 || |||||||| ||||| ||||| ||||||||||| ||||| ||| | ||||| ||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 158240 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTT 158299 ||||| ||||| || | |||||||||||||| || | |||||||| || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 158300 CGTGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAG 158359 |||||||| ||||||| || || ||| | || || || ||||||||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 158360 ACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 158419 || ||||||||||| || || || || ||||| |||||||| ||||||||||||||||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 158420 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 158479 ||||||||||| ||||| || ||||||||| | ||||| ||||| ||||| || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 158480 TTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 158539 ||||| || | || | ||||| ||||| |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 158540 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCT 158599 || | ||||| || |||||||| || ||||| ||||| || | | ||||| ||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 158600 GGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCA 158647 | ||||||||||||||||| || |||||||| |||||||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCA 17841 Score = 179 bits (198), Expect = 4e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 157676 TTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTG 157735 ||||| |||||| | || || || | |||||||| || | |||||||| ||||| | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 157736 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157794 ||||| ||||| || | |||| ||| || || |||||| |||| ||| |||||||||| Sbjct 13143 ATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCATCGCTGCTCC 13201 Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854 || || || || || || ||||| || |||||| |||||||| | | || || ||||| Sbjct 13202 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 13261 Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCA 157902 ||||||||||||||| || ||||||| ||||||||| |||||||| || Sbjct 13262 CATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 157904 TTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTC 157963 |||||||| || |||||||| || ||| | || |||||| | || ||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 157964 CAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAA 158023 ||| | | || | |||||| | | || |||| || ||||| |||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 158024 CTCTCTTACCGTTTAGGTATGC 158045 | ||||||||||||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 109 bits (120), Expect = 6e-19 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 158035 TTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGC 158094 ||||| ||||| || ||||| |||||| || ||||| ||||| || || || | ||| Sbjct 16122 TTTAG--ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 16179 Query 158095 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158154 |||||| | |||| ||| |||| |||||||||||||| || | ||||||| | ||||| Sbjct 16180 TGTATTCATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 16239 Query 158155 CTCTGGTACTTTTAACTACATG 158176 || || ||||| |||| |||| Sbjct 16240 TTCAGGAACTTTCAACTTCATG 16261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573014201289600