Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq21 518 4e-142 >seq21 Length=95773 Score = 518 bits (574), Expect = 4e-142 Identities = 715/994 (72%), Gaps = 12/994 (1%) Strand=Plus/Plus Query 161718 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 161777 || |||||||| ||||| || ||||| || ||||||||| |||| ||| || |||| Sbjct 40295 GACCGTTTCGTATTTGTAGGTTGGTCAGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCA 40354 Query 161778 ATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATACCCATGGTCTCGCT 161837 | || |||||| ||||||| |||||||| | ||| |||||||| ||||| | ||| Sbjct 40355 CTAGGAGGTTGGTTTACTGGTACAACTTTTGTAACATCATGGTATACACATGGGTTAGCT 40414 Query 161838 AGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGACGCT 161897 | ||| || | || ||| ||||| | || || ||||| || || || || | Sbjct 40415 ACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTTTCAACACCTGCAAACAGT 40474 Query 161898 ATGGGTCATTCTCTTCTTCTTCTC-TGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTG 161956 |||| || || || || |||| |||||||| || |||||||| ||||| || || Sbjct 40475 ATGGCACACTCA-TTATTATTCTTATGGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTG 40533 Query 161957 GGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGG 162016 | ||| | || || | |||| ||||| || | |||||| | || | ||||||| Sbjct 40534 GTGTCAATTAGGTGGTTTATGGACATTTGTTGCTTTACATGGTTCTTTTGGTTTAATTGG 40593 Query 162017 ATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTA----TCCGTCCCTACAATG 162072 ||||||| | ||||| |||||| | |||||| | ||| | ||||| ||||||| Sbjct 40594 ATTCATGTTACGTCAATTTGAAATTGCACGT----TCAGTAAACTTACGTCCTTACAATG 40649 Query 162073 CTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGG 162132 ||||||| || || | |||||||||||||||||| || ||| | || |||||||| | Sbjct 40650 CTATTGCTTTTTCAGCTCCTATTGCTGTTTTTGTTTCAGTATTCTTAATTTACCCATTAG 40709 Query 162133 GTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGT 162192 | || || ||||||| || || || ||||| || || || ||||| | || | | Sbjct 40710 GACAATCAGGTTGGTTCTTTGCACCTAGTTTTGGTGTTGCTGCTATCTTCCGTTTTATTT 40769 Query 162193 TGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTG 162252 |||| | ||||| || ||||||||||| | ||||| |||||||||||||| ||||||| Sbjct 40770 TGTTCTTCCAAGGTTTTCATAACTGGACATTAAACCCATTCCATATGATGGGTGTTGCTG 40829 Query 162253 GTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTAT 162312 || | |||||| || | ||| |||||||||||| | || |||||||| ||||||| Sbjct 40830 GTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTTGAAAACACATTAT 40889 Query 162313 ACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGA 162372 || ||||| || |||||||| || || ||| | | || || | ||||| | Sbjct 40890 TTGAAGATGGTGATGGTGCAAACACATTCCGTGCATTTAACCCAACTCAAGCTGAAGAAA 40949 Query 162373 CTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTA 162432 |||| |||||||| ||||| ||||| |||||||| || || || ||| |||| || || | Sbjct 40950 CTTACTCTATGGTAACTGCGAACCGTTTCTGGTCACAAATTTTTGGTGTTGCTTTCTCAA 41009 Query 162433 ACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCT 162492 |||| || |||||||| || || ||||| || || || || | || ||||||| || Sbjct 41010 ACAAACGTTGGCTTCACTTCTTTATGTTATTAGTTCCGGTAACAGGACTATGGATGTCTG 41069 Query 162493 CTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGA 162552 | ||||| || ||||| | ||||| ||| | |||||||| || ||||| || || | Sbjct 41070 CGATTGGTGTTGTTGGTTTAGCTCTAAACTTACGTGCTTATGACTTCGTATCACAAGAAA 41129 Query 162553 TCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATG 162612 | | || || ||||| || ||||| ||||| ||||| ||||| || ||| | | |||| Sbjct 41130 TTCGTGCTGCTGAAGACCCAGAGTTCGAAACTTTCTATACTAAAAATATTTTATTAAATG 41189 Query 162613 AAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTA-TCTTCCCA 162671 |||| | ||||| ||| | || || |||||||| || || | |||| | ||||| Sbjct 41190 AAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACGA-ACGTTTAGTATTCCCT 41248 Query 162672 GAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 |||||||| | ||| | || ||||| || |||| Sbjct 41249 GAAGAAGTATTACCTCGTGGTAACGCTCTATAAT 41282 Score = 390 bits (432), Expect = 1e-103 Identities = 371/474 (78%), Gaps = 0/474 (0%) Strand=Plus/Plus Query 160464 GTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 160523 || |||||||| ||||| || || |||||||| || ||||||||| | || || ||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 160524 GTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTT 160583 ||||| ||||| || || ||||||||||||||||| | |||||||| || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 160584 CGTGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAG 160643 |||||||| ||||||| || || ||| | || || || ||||||||||| ||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 160644 ACCTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCA 160703 || ||||||||||| || || || |||||||| |||||||| ||||||||||| || || Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 160704 TTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGG 160763 ||||||||||| |||||| | ||||||||| | || || ||||| || || || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 160764 TTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 160823 ||||||||| | ||| || || ||||| |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 160824 TCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCT 160883 || | | ||| ||||||||||| | ||||| ||||| ||| | | || |||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 160884 GGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 160937 | ||||||||||||||||| || |||||||| |||||||||||| | ||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGAC 17847 Score = 154 bits (170), Expect = 2e-32 Identities = 178/237 (75%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 159951 TGGGAATCTTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 160010 |||| | |||||| |||||| | |||||||| | ||||| | || |||||||||| Sbjct 13074 TGGGCACGTTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTT 13133 Query 160011 GGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGT 160069 || || | ||||| || || | || | || || || || |||||| |||| ||| | Sbjct 13134 GGTGTGATCATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCAT 13192 Query 160070 CGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 160129 ||||||||| || || || ||||| || |||||||| || || |||||||| | | || Sbjct 13193 CGCTGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATA 13252 Query 160130 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCA 160186 || |||||||||||||||||||| || ||||| |||| ||||| || ||||| || Sbjct 13253 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 114 bits (126), Expect = 1e-20 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 160319 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 160378 ||||| ||||| || ||||| |||||| || ||||| ||||| || || || |||| Sbjct 16122 TTTAG--ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 16179 Query 160379 TGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160438 ||||||| || | || ||| |||| |||||||||||||| || | ||||||| | ||||| Sbjct 16180 TGTATTCATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 16239 Query 160439 CTCTGGTACTTTTAACTACATG 160460 || || ||||| |||| |||| Sbjct 16240 TTCAGGAACTTTCAACTTCATG 16261 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 160188 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 160247 ||||| || || |||||||| || || | ||||||||| | || ||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 160248 CAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAA 160307 ||| | | || | ||||||| | | || |||| || ||||| |||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 160308 CTTTCATACCGTTTAGGTATGC 160329 | || |||||||||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559494432481600