Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq21 444 9e-120 >seq21 Length=95773 Score = 444 bits (492), Expect = 9e-120 Identities = 689/976 (71%), Gaps = 16/976 (2%) Strand=Plus/Plus Query 175893 TTTATTGGCTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGG 175952 ||| | || ||||| || | || ||| |||| ||| || |||| | || || ||| Sbjct 40307 TTTGTAGGTTGGTCAGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGG 40366 Query 175953 CTTACTGGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTT 176012 ||||||| ||||||||||| || ||||| || ||||| | ||| |||| || | Sbjct 40367 TTTACTGGTACAACTTTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTA 40426 Query 176013 GAGGGTGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCT 176072 || ||| |||||| | || || || || || || ||||| | ||||| || || Sbjct 40427 GAAGGTTGTAACTTCTTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCA 40486 Query 176073 CTTCTTCTACTT-TGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGG 176131 || || | ||| |||||||| ||| |||| || || || || ||| ||| | || Sbjct 40487 -TTATTATTCTTATGGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGG 40545 Query 176132 AGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCG 176191 || | ||| | ||||||||| | || ||| | || | | | |||||||||||| | || Sbjct 40546 TGGTTTATGGACATTTGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACG 40605 Query 176192 TCAGTTTGAACTGGCAAGACTCATTGGTA----TCCGTCCCTACAACGCTATTGCATTCA 176247 ||| |||||| | ||| | ||| ||| | ||||| ||||| |||||||| || Sbjct 40606 TCAATTTGAAATTGCACGT-TCA---GTAAACTTACGTCCTTACAATGCTATTGCTTTTT 40661 Query 176248 GTGGTCCTATCGCTGTATTTGT--CAGTGTGTTTCTTC-TATACCCACTAGGTCAATCTT 176304 | |||||| ||||| ||||| |||| | |||| | |||||| |||| ||||| Sbjct 40662 CAGCTCCTATTGCTGTTTTTGTTTCAGTAT---TCTTAATTTACCCATTAGGACAATCAG 40718 Query 176305 CCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTC 176364 ||||||||||| || |||||||| || || ||||| | || | ||||| | | Sbjct 40719 GTTGGTTCTTTGCACCTAGTTTTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCC 40778 Query 176365 AGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 176424 | ||||| || ||||||||| | ||||| |||||||||||||| ||||||||| | ||| Sbjct 40779 AAGGTTTTCATAACTGGACATTAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAG 40838 Query 176425 GTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATG 176484 ||| || || ||| ||| || || || | |||||||||||| || ||| |||||||| Sbjct 40839 GTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATG 40898 Query 176485 GAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGA 176544 | || ||||| ||| ||| || | | || || | ||||| || || || | Sbjct 40899 GTGATGGTGCAAACACATTCCGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTA 40958 Query 176545 TGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTT 176604 |||| ||||||||||| |||||||| ||||| || || ||||| || || || |||| Sbjct 40959 TGGTAACTGCGAACCGTTTCTGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTT 41018 Query 176605 GGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCA 176664 ||||||||||||||||||| || || || || | || || ||| | || ||||| Sbjct 41019 GGCTTCACTTCTTTATGTTATTAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTG 41078 Query 176665 TCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAG 176724 | |||| | ||||| || | ||||||||||| || || ||||| ||| | || | Sbjct 41079 TTGTTGGTTTAGCTCTAAACTTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTG 41138 Query 176725 CAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAA 176784 | ||||| || ||||| ||||||||||| || || || || | | || ||||| | Sbjct 41139 CTGAAGACCCAGAGTTCGAAACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTC 41198 Query 176785 GAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTC 176844 | || |||||||| || || |||||||| || || |||||||| |||||||| Sbjct 41199 GTGCTTGGATGGCTGCTCAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTAT 41258 Query 176845 TACCTAGAGGTAACGC 176860 ||||| | |||||||| Sbjct 41259 TACCTCGTGGTAACGC 41274 Score = 407 bits (450), Expect = 2e-108 Identities = 378/480 (79%), Gaps = 0/480 (0%) Strand=Plus/Plus Query 174972 GTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGT 175031 || |||||||| ||||||||||| | |||||||| ||||||||||| || || || ||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 175032 GTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTC 175091 || || ||||||||||| ||||| || ||||| |||||| | ||||| || || | || Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 175092 CGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAG 175151 ||||| |||||||||| || || ||| | || ||||| ||||| ||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 175152 ACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 175211 || || |||||||| || || || || ||||| |||||||| ||||||||||||||||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 175212 TTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGG 175271 ||||||||||| || ||| | |||||||||||||| || ||||||||||| ||||| ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 175272 TTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAG 175331 ||||| || | ||| |||| || ||||| |||||||| || ||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 175332 TCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCT 175391 || ||| | || ||||||| | || || ||||| ||||| || | | ||| | ||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 175392 GGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCA 175451 | || |||||||| ||||| || | || || |||||||||||| |||| || ||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAGCA 17853 Score = 187 bits (206), Expect = 4e-42 Identities = 172/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 174477 TGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCT 174536 ||| |||| || || | || ||| | ||| |||||||||| ||||| | ||||| ||| Sbjct 13092 TGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATCATGATCCCT 13151 Query 174537 ACATTGTTAGCCGCAACTGTATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGAC 174596 ||||| ||| | || ||| | ||||| ||||||||| | | |||||| ||||| || Sbjct 13152 ACATTATTAACTGCTACTTCAGTATTCATCATCGCTTTCATCGCTGCTCCTCCAGTAGAT 13211 Query 174597 ATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCT 174656 ||||| || |||||||| ||||| |||||||| | | || |||||||||||||||||| Sbjct 13212 ATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAACATCATCTCT 13271 Query 174657 GGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACA 174694 ||||| || ||||||| ||||||||| |||||||| || Sbjct 13272 GGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 127 bits (140), Expect = 3e-24 Identities = 114/142 (80%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 174827 TTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGC 174886 ||||| ||| | |||||||| |||||| |||||||||||||||||||| ||| | || Sbjct 16122 TTTAG--ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 16179 Query 174887 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTAT 174946 |||||| | |||| ||| |||| |||||||| ||||| |||| ||||| || ||||| Sbjct 16180 TGTATTCATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 16239 Query 174947 CTCTGGAACATTCAACTACATG 174968 || ||||| ||||||| |||| Sbjct 16240 TTCAGGAACTTTCAACTTCATG 16261 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 174696 TTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTC 174755 ||||||||||| |||||||| || | | || || ||| | |||||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 174756 CAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAA 174815 ||| || | || | |||||| | | ||||||| | || ||||| |||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 174816 CTCTCTTATCGTTTAGGTATG 174836 | ||||| |||||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATG 14814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729917118203840