Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq21 446 2e-120 >seq21 Length=95773 Score = 446 bits (494), Expect = 2e-120 Identities = 711/1015 (70%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 179220 TGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCT 179279 ||||| |||| | || |||||| | | || || || || ||||| |||||||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 40321 Query 179280 GGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCT 179339 || || || ||| |||| ||| || |||| | || |||||| ||||||| ||| || Sbjct 40322 GGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAACT 40381 Query 179340 TTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTT 179399 ||||| || ||||| || || || | |||| ||| || | || ||| |||||| Sbjct 40382 TTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 40441 Query 179400 CTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TG 179458 | || || || || || || ||||| | ||||| || || || || | ||| || Sbjct 40442 TTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCA-TTATTATTCTTATG 40500 Query 179459 GGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTT 179518 |||||| || |||| || |||| || ||||| ||| | || || | |||| || Sbjct 40501 GGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACATT 40560 Query 179519 CGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGC 179578 || ||| | || ||| | || | | | ||||| |||||| | | ||||||||| |||| Sbjct 40561 TGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTGC 40620 Query 179579 TCGCCTGATTGGTATCA-GACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTAT 179637 || | | | | | | ||||||||||| ||||||||||| | |||||||||||| | Sbjct 40621 ACGT-TCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTTT 40679 Query 179638 TCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCT 179697 | || || ||| | || || || || ||||| || |||||| || || || | Sbjct 40680 TTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGTT 40739 Query 179698 TTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGC 179757 ||||||| || || |||||| | || | ||||| | || ||||| || |||||||| Sbjct 40740 TTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACAT 40799 Query 179758 TCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTA 179817 | ||||| |||||||||||||| ||||||||| | |||| | || | | |||||| Sbjct 40800 TAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTA 40859 Query 179818 TCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTA 179877 | || || | |||||| || || ||||| | ||||||||| || ||||| || || Sbjct 40860 TTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACATTCC 40919 Query 179878 AGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 179937 || ||| | | || || | ||||| ||||| |||||||| ||||| ||||| |||| Sbjct 40920 GTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTTTCT 40979 Query 179938 GGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 179997 |||| || || || ||| |||| || || ||||| || |||||||| || || ||||| | Sbjct 40980 GGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGTTAT 41039 Query 179998 TTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACC 180057 | || || || | || ||||||| || | ||||| || ||||| | ||||| ||| Sbjct 41040 TAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAAACT 41099 Query 180058 TTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGA 180117 | |||||||| || |||||| || || || | || || ||||| || ||||| || | Sbjct 41100 TACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCGAAA 41159 Query 180118 CCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTG 180177 | ||||| || || || ||| | | |||||||| | ||||| ||| |||| | | Sbjct 41160 CTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 41219 Query 180178 ATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 | |||||||| || || |||||||| |||||||| | || | ||||| || Sbjct 41220 ACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGC 41274 Score = 387 bits (428), Expect = 2e-102 Identities = 366/467 (78%), Gaps = 0/467 (0%) Strand=Plus/Plus Query 178353 GTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGT 178412 ||||||||||| ||||| |||||||| |||||||| ||||||||||| ||||| || ||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 178413 GTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTT 178472 ||||| ||||||||| | ||| ||| ||||||||||| || ||||| || || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 178473 CGTGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAG 178532 |||||||| ||||||| ||||| ||| | || || || ||||| ||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 178533 ACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCA 178592 || ||||||||||| || ||||| || ||||| |||||||| ||||||||||| ||||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 178593 TTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGG 178652 ||||||||||| |||||| | ||||||||| | || || ||||| || || || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 178653 TTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAG 178712 ||||| || | || | || ||||| || ||||| || || |||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 178713 TCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCC 178772 || | | || |||||| ||||| | ||||||||||| ||| | |||||||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 178773 GGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCC 178819 | || |||||||| |||||||| || ||||| ||||||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCC 17840 Score = 156 bits (172), Expect = 5e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 ||||| |||||| | |||||||| | ||||| | || |||||||||| || || | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || | || | || ||| || || |||||| |||| ||| |||||||||| Sbjct 13143 ATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCATCGCTGCTCC 13201 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || ||||| || |||||||| || || |||||||| | | || || ||||| Sbjct 13202 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 13261 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCA 178075 ||||||||||||||| || ||||| |||| ||||| || ||||| || Sbjct 13262 CATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 178077 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 178136 ||||| || || |||||||| || || | ||||||||| | || ||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 178137 CAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAA 178196 ||| | | || | ||||||| || | ||||||| |||||||| |||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 178197 CTTTCATACCGTTTAGGTATGC 178218 | || |||||||||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 18755 GGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAG 18814 ||| |||||| ||| ||||||||||| ||| ||||||||| ||||||| | |||||| || Sbjct 38123 GGGATTGTAGTTCAATTGGTTAGAGCACCTCCCTGTCACGGAGGAAGTTGCGGGTTCGAG 38182 Query 18815 TCCCATCAATCCCGT 18829 |||| ||| |||||| Sbjct 38183 TCCCGTCAGTCCCGT 38197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605999237235840