Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq21 491 5e-134 >seq21 Length=95773 Score = 491 bits (544), Expect = 5e-134 Identities = 709/994 (71%), Gaps = 12/994 (1%) Strand=Plus/Plus Query 159929 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 159988 || |||||||| ||||| || ||||| || ||||||||| |||| ||| || |||| Sbjct 40295 GACCGTTTCGTATTTGTAGGTTGGTCAGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCA 40354 Query 159989 ATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCGCT 160048 | || |||||| ||||||| |||||||| | ||| |||||||| ||||| | ||| Sbjct 40355 CTAGGAGGTTGGTTTACTGGTACAACTTTTGTAACATCATGGTATACACATGGGTTAGCT 40414 Query 160049 AGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGACGCT 160108 | ||| || | || ||| ||||| | || || ||||| || || || || | Sbjct 40415 ACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTTTCAACACCTGCAAACAGT 40474 Query 160109 ATGGGTCATTCTCTTCTTCTTCTC-TGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 160167 |||| || || || || |||| |||||||| || |||||||| ||||| | || Sbjct 40475 ATGGCACACTCA-TTATTATTCTTATGGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTG 40533 Query 160168 GATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGG 160227 | ||| | || || | |||| ||||| || | |||||| | || | ||||||| Sbjct 40534 GTGTCAATTAGGTGGTTTATGGACATTTGTTGCTTTACATGGTTCTTTTGGTTTAATTGG 40593 Query 160228 ATTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCTTACAATG 160283 ||||||| | ||||| |||||| | |||||| || ||| | ||||||||||||| Sbjct 40594 ATTCATGTTACGTCAATTTGAAATTGCACGT----TCAGTAAACTTACGTCCTTACAATG 40649 Query 160284 CTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGG 160343 ||||||| || || | |||||||||||| ||||| |||||| | || |||||||| | Sbjct 40650 CTATTGCTTTTTCAGCTCCTATTGCTGTTTTTGTTTCAGTATTCTTAATTTACCCATTAG 40709 Query 160344 GTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGT 160403 | || || ||||||| || || || ||||| || || || ||||| | || | | Sbjct 40710 GACAATCAGGTTGGTTCTTTGCACCTAGTTTTGGTGTTGCTGCTATCTTCCGTTTTATTT 40769 Query 160404 TGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTG 160463 ||||| | ||||| ||||| |||||||| | ||||| |||||||||||||| ||||||| Sbjct 40770 TGTTCTTCCAAGGTTTTCATAACTGGACATTAAACCCATTCCATATGATGGGTGTTGCTG 40829 Query 160464 GTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGT 160523 || | |||| | || | | |||| || || || | |||||| || |||||| | | Sbjct 40830 GTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTTGAAAACACATTAT 40889 Query 160524 ATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGA 160583 ||||||||| || ||||| || || || ||| | | || || | ||||| | Sbjct 40890 TTGAAGATGGTGATGGTGCAAACACATTCCGTGCATTTAACCCAACTCAAGCTGAAGAAA 40949 Query 160584 CTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTA 160643 |||| |||||||| ||||| ||||| |||||||| || || || ||| |||| || || | Sbjct 40950 CTTACTCTATGGTAACTGCGAACCGTTTCTGGTCACAAATTTTTGGTGTTGCTTTCTCAA 41009 Query 160644 ACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCA 160703 |||| || |||||||| || || ||||| || || || || | || || |||| || Sbjct 41010 ACAAACGTTGGCTTCACTTCTTTATGTTATTAGTTCCGGTAACAGGACTATGGATGTCTG 41069 Query 160704 GTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGA 160763 ||||| || ||||| | ||||| || | |||||||| || ||||| ||||| | Sbjct 41070 CGATTGGTGTTGTTGGTTTAGCTCTAAACTTACGTGCTTATGACTTCGTATCACAAGAAA 41129 Query 160764 TTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATG 160823 || | || || ||||| ||||| || || || ||||| || || || || || | |||| Sbjct 41130 TTCGTGCTGCTGAAGACCCAGAGTTCGAAACTTTCTATACTAAAAATATTTTATTAAATG 41189 Query 160824 AAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTA-TCTTCCCA 160882 |||| | ||||| ||| | || || |||||||| || || | |||| | ||||| Sbjct 41190 AAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACGA-ACGTTTAGTATTCCCT 41248 Query 160883 GAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 |||||||| | ||| | || ||||| || |||| Sbjct 41249 GAAGAAGTATTACCTCGTGGTAACGCTCTATAAT 41282 Score = 405 bits (448), Expect = 6e-108 Identities = 374/474 (79%), Gaps = 0/474 (0%) Strand=Plus/Plus Query 158883 GTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGG 158942 || |||||||| ||||| ||||| ||||||||||| ||||| ||| | ||||| ||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 158943 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTT 159002 ||||| ||||| || | |||||||||||||| || | |||||||| || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 159003 CGTGAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAA 159062 |||||||| ||||||| || || ||| | || ||||| ||||| |||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 159063 ACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 159122 || || || ||||| || || || |||||||| |||||||| ||||||||||||||||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 159123 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 159182 ||||||||||| ||||| || ||||||||| | ||||| ||||| ||||| || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 159183 TTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 159242 ||||| || | || | ||||| ||||| |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 159243 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCA 159302 || | ||||| || |||||||| || ||||| ||||| || | | |||||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 159303 GGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 159356 | ||||||||||||||||| || |||||||| |||||||||||| | ||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGAC 17847 Score = 150 bits (166), Expect = 2e-31 Identities = 177/237 (75%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 158370 TGGGAATCTTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 158429 |||| | |||||| |||||| | |||||||| | ||||| | || |||||||||| Sbjct 13074 TGGGCACGTTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTT 13133 Query 158430 GGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGT 158488 || || | ||||| || || | || | || || || || |||||| |||| ||| | Sbjct 13134 GGTGTGATCATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCAT 13192 Query 158489 CGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 158548 ||||||||| || || || ||||| || |||||||| || || |||||||| | | || Sbjct 13193 CGCTGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATA 13252 Query 158549 TGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCA 158605 || |||||||||||||||||||| || || || |||| ||||| || ||||| || Sbjct 13253 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 122 bits (134), Expect = 1e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 158745 ATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTC 158804 ||||| || ||||| |||||| || ||||||||||| || || || ||||||||||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 158805 CTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGT 158864 || |||| ||| |||| |||||||||||||| || | ||||||| | ||||| || || Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 158865 ACTTTTAACTACATG 158879 ||||| |||| |||| Sbjct 16247 ACTTTCAACTTCATG 16261 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 158607 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 158666 ||||| || || |||||||| || || | ||||||||| | || ||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 158667 CAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAA 158726 ||| | | || | ||||||| | | || |||| || ||||| ||||| |||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 158727 CTTTCATACCGCTTAGGTATGC 158748 | || ||||| |||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552464152701440