Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq21 522 3e-143 >seq21 Length=95773 Score = 522 bits (578), Expect = 3e-143 Identities = 732/1020 (72%), Gaps = 14/1020 (1%) Strand=Plus/Plus Query 180018 TGGTTCGATGTCCTGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCT 180077 ||||| |||| | || |||||| | | ||||| || |||||||| || ||||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 40321 Query 180078 GGACTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCT 180137 || || || ||| |||| ||| || |||| | || |||||| ||||||| ||| || Sbjct 40322 GGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAACT 40381 Query 180138 TTTGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTT 180197 ||||| || ||||| || || || | ||| |||| || | |||||| |||||| Sbjct 40382 TTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 40441 Query 180198 CTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT-TG 180256 | || || || || || || ||||| || ||||| || || || || | ||| || Sbjct 40442 TTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCA-TTATTATTCTTATG 40500 Query 180257 GGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTT 180316 |||||| || |||| || |||| || ||||| ||| | || || | |||| || Sbjct 40501 GGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACATT 40560 Query 180317 CGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGC 180376 || ||| | || ||| | || | |||||||||| ||| |||| || |||||| | || Sbjct 40561 TGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTGC 40620 Query 180377 ACGTCTTATTGGTA----TCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTG 180432 |||| | ||| | |||||||||||||||||||| || || | |||||| |||| Sbjct 40621 ACGT----TCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTG 40676 Query 180433 TATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCT 180492 | ||||| ||||| | || |||||| | || || || ||||||||||||| || Sbjct 40677 TTTTTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTA 40736 Query 180493 CTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCT-TTCTT-CAGGGTTTCCACAACTG 180550 |||||| || || || ||||| | || || | | ||||| || ||||| || ||||| Sbjct 40737 GTTTTGGTGTTGCTGCTATCTTCCGTTT--TATTTTGTTCTTCCAAGGTTTTCATAACTG 40794 Query 180551 GACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATC 180610 ||| | ||||| |||||||||||||| ||||||||| | |||||| || || ||| Sbjct 40795 GACATTAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATG 40854 Query 180611 AGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACAC 180670 || || || || | ||||| || |||||| | | ||||||||| || |||||||| Sbjct 40855 TGCTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACAC 40914 Query 180671 CTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCG 180730 || |||||| | |||| |||| || ||||||||||||||||| ||||| ||||| Sbjct 40915 ATTCCGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCG 40974 Query 180731 CTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCAT 180790 |||||||| || || || ||| |||| || || ||||| || |||||||| || || || Sbjct 40975 TTTCTGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTAT 41034 Query 180791 GTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCT 180850 ||| || || || || | || ||||||| || | ||||| || ||||| | ||||| Sbjct 41035 GTTATTAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCT 41094 Query 180851 CAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTT 180910 ||| | |||||||| || ||||| ||||| || | || || ||||| || ||||| Sbjct 41095 AAACTTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTT 41154 Query 180911 CGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACC 180970 ||| || ||||| || || || || |||| |||||||| | ||||| ||| |||| | Sbjct 41155 CGAAACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGC 41214 Query 180971 TGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 | || |||||||||||| || | |||||||||||||| |||| | |||||||| Sbjct 41215 TCAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGC 41274 Score = 399 bits (442), Expect = 3e-106 Identities = 373/474 (79%), Gaps = 0/474 (0%) Strand=Plus/Plus Query 179365 GTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGG 179424 || |||||||| ||||| ||||| ||||||||||| ||||| ||| | ||||| ||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 179425 GTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTT 179484 ||||| ||||| || | ||||||||||||||||| | |||||||| || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 179485 CGTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAG 179544 |||||||||||||| | || || ||| | || || || ||||| ||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 179545 ACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCC 179604 || || |||||||| || ||||| || ||||| |||||||| ||||||||||| || || Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 179605 TTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGG 179664 || |||||||| || || || ||||||||| | ||||| ||||| ||||| || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 179665 TTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAG 179724 ||||||||| | || | ||||| ||||| |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 179725 TCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCA 179784 || | |||| ||||| ||||| | ||||||||||| ||| | | |||||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 179785 GGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 179838 || ||||||||||||||||| || |||||||| |||||||||||| | ||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGAC 17847 Score = 168 bits (186), Expect = 8e-37 Identities = 181/237 (76%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 178852 TGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTC 178911 |||| || ||||| |||||| | || || || | || ||||| || | |||||||| Sbjct 13074 TGGGCACGTTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTT 13133 Query 178912 GGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGT 178970 |||||| | ||||| ||||| || | |||| ||| || || |||||| | |||||| | Sbjct 13134 GGTGTGATCATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCAT 13192 Query 178971 AGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179030 || || ||||| || ||||| || || |||||||| || || |||||||| | | || Sbjct 13193 CGCTGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATA 13252 Query 179031 TGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACA 179087 |||||||||||||||||||||||||| || || | ||||||||| || ||||| || Sbjct 13253 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 131 bits (144), Expect = 2e-25 Identities = 110/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 179227 ATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTC 179286 |||||||| ||||| ||| || |||||||||||||| || ||||| | ||| |||||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 179287 CTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGT 179346 || |||| ||| |||| ||||||||||||||||| | ||||||| | ||||| || || Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 179347 ACTTTTAACTACATG 179361 ||||| |||| |||| Sbjct 16247 ACTTTCAACTTCATG 16261 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 179089 TTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTC 179148 |||||||| || |||||||| || || | ||||||||| | || ||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 179149 CAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAA 179208 ||| | | || | |||||| | | || |||| || ||||| |||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 179209 CTTTCTTACCGTCTAGGTATGC 179230 | ||||||||| ||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 18908 GGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAG 18967 ||| |||||| ||| ||||||||||| ||| ||||||||| ||||||| | |||||| || Sbjct 38123 GGGATTGTAGTTCAATTGGTTAGAGCACCTCCCTGTCACGGAGGAAGTTGCGGGTTCGAG 38182 Query 18968 TCCCATCAATCCCGT 18982 |||| ||| |||||| Sbjct 38183 TCCCGTCAGTCCCGT 38197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610319163363840