Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq787 91.5 2e-13 seq723 86.0 9e-12 >seq787 Length=122967 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||| ||||||| || ||||||||||| | || || | ||||| || || ||||| Sbjct 88049 GCAGCCGAAGTCTGTGTGCAGGCCCTCATCGCGGCTGATGAGCTCGTTGGAGAAGGTGAG 88108 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| ||| | || || |||| Sbjct 88109 CCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGCTGCCTGAGAAGA 88167 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 ||||||| || || || || | || || || | ||| Sbjct 88168 AGATGCCCTCCACGGCGGCGTAGGCCACCAGGCGCTC 88204 >seq723 Length=331235 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 || |||||| || ||||||||||| || || || | |||||||| || ||||| || Sbjct 27118 GCAAAGTCAGTGTGCAGGCCCTCATCCCTGCTGATGAGCTCGTTAGAGAAGGTGAGGCCC 27177 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGAT 39738 ||||| || || ||||| |||||||| || ||||| ||| ||| | || || ||| ||| Sbjct 27178 GGCATAAGGCCCCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGCTGCCGGAGAAGTGGAT 27236 Query 39739 GCCTTCTAC 39747 ||| || || Sbjct 27237 GCCCTCCAC 27245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686897053859520