Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq787 96.9 4e-15 seq723 91.5 2e-13 seq211 87.8 2e-12 >seq787 Length=122967 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || ||||| || ||| |||||| || || |||||| || || |||||||| || Sbjct 88064 GTGCAGGCCCTCATCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 88123 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || || ||| ||||||||||| |||||||| Sbjct 88124 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCTGAGAAGAAGATGCCCTCCACGGC 88183 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||| | || | || ||||| |||||| Sbjct 88184 GGCGTAGGCCACCAGGCGCTCCGCAAAG 88211 >seq723 Length=331235 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 130012 CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 130071 ||| ||||| || ||| || ||||| || | | |||||| || || |||||| || Sbjct 27114 CACCGCAAAGTCAGTGTGCAGGCCCTCATCCCTGCTGATGAGCTCGTTAGAGAAGGTGAG 27173 Query 130072 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 130131 || ||||| || ||||||||||| | |||||| || || || || ||| |||||| Sbjct 27174 GCCCGGCATAAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGTG 27233 Query 130132 GATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||| |||||||| || || || || | || |||| |||||| Sbjct 27234 GATGCCCTCCACGCAGGCAAAGGCCAGCAGGCGCTGCGCAAAG 27276 >seq211 Length=228018 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 ||| ||||| || ||||| || || || ||| ||||| || |||||| || || || Sbjct 20951 ATCGAAGCGGCCGGGGCGCAGCAGCGCTGGGTCCAGGATGTCGGCGCGGTTGGTTGCTGC 20892 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 |||||||| |||||| || | | |||||||| ||||||||||||| || || || | Sbjct 20891 GATGACAATGATGCCGGTGTTGCCCTCAAAGCCGTCCATCTCAGTCAGCAGCTGGTTAAG 20832 Query 14185 GGTTTGTTCGCGTTCATCATT 14205 || || ||||| || || || Sbjct 20831 TGTCTGCTCGCGCTCGTCGTT 20811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618424624758080